B020017C02Rik Pseudogene Detail

Summary

• Symbol
  B020017C02Rik
• Name
  RIKEN cDNA B020017C02 gene
• Synonyms
  Gm19849

• Feature Type
  pseudogene
• IDs
  MGI:3588285
  NCBI Gene: 100503708
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:54540302-54541384 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 25.57 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588285	pseudogene	Chr3:54540302-54541989 (-)
129S1/SvImJ	ENSMUSG00200023491	pseudogene	Chr3:51392237-51393924 (-)
A/J	ENSMUSG00195032484	pseudogene	Chr3:51328785-51330472 (-)
AKR/J	ENSMUSG00220031578	pseudogene	Chr3:51392551-51394244 (-)
BALB/cJ	ENSMUSG00180027961	pseudogene	Chr3:51413443-51415139 (-)
C3H/HeJ	ENSMUSG00175008812	pseudogene	Chr3:51253166-51254859 (-)
C57BL/6NJ	ENSMUSG00215010116	pseudogene	Chr3:51686822-51688509 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010857	pseudogene	Chr3:48213331-48215009 (-)
CAST/EiJ	ENSTCUG00005009778	pseudogene	Chr3:51065418-51067096 (-)
CBA/J	ENSMUSG00210003669	pseudogene	Chr3:51374558-51376251 (-)
DBA/2J	ENSMUSG00185028059	pseudogene	Chr3:51588256-51589940 (-)
FVB/NJ	ENSMUSG00205009641	pseudogene	Chr3:50566997-50568681 (-)
JF1/MsJ	ENSUMUG00000029603	pseudogene	Chr3:51019818-51021481 (-)
LP/J	ENSMUSG00230005011	pseudogene	Chr3:53546873-53548560 (-)
NOD/ShiLtJ	ENSMUSG00190033022	pseudogene	Chr3:51740615-51742311 (-)
NZO/HlLtJ	ENSMUSG00225017459	pseudogene	Chr3:56159264-56160951 (-)
PWK/PhJ	ENSLUMG00010010143	pseudogene	Chr3:51141969-51143635 (-)
SPRET/EiJ	ENSMSPG00010007670	pseudogene	Chr3:51900237-51901903 (-)
WSB/EiJ	ENSIUOG00005009414	pseudogene	Chr3:51538389-51540070 (-)

Homology

• Gene Tree
  B020017C02Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving B020017C02Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000104831 (Evidence)
• NCBI Gene
  100503708

Representative Sequences			Length	Strain/Species
genomic	100503708	NCBI Gene Model | MGI Sequence Detail	1083	C57BL/6J
transcript	AK139788	GenBank | ENA | DDBJ | MGI Sequence Detail	3026	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:5012034

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for B020017C02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33279	Chr3:54542047-54542050 (-)	-665 bp