G730013B05Rik Gene Detail

Summary

• Symbol
  G730013B05Rik
• Name
  RIKEN cDNA G730013B05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588276
  NCBI Gene: 619312
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:50346608-50379822 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 31.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1006 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588276	lncRNA gene	Chr16:50346608-50379823 (+)
129S1/SvImJ	ENSMUSG00200021698	lncRNA gene	Chr16:47231633-47265033 (+)
A/J	ENSMUSG00195003537	lncRNA gene	Chr16:46835497-46869260 (+)
AKR/J	ENSMUSG00220022968	lncRNA gene	Chr16:47188839-47222573 (+)
BALB/cJ	ENSMUSG00180029057	lncRNA gene	Chr16:47040187-47073913 (+)
C3H/HeJ	ENSMUSG00175026559	lncRNA gene	Chr16:47313300-47346005 (+)
C57BL/6NJ	ENSMUSG00215008668	lncRNA gene	Chr16:47149693-47183425 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005149	lincRNA gene	Chr16:47338952-47368612 (+)
CAST/EiJ	ENSTCUG00005012902	lncRNA gene	Chr16:47442268-47475372 (+)
CBA/J	ENSMUSG00210016811	lncRNA gene	Chr16:47349538-47382718 (+)
DBA/2J	ENSMUSG00185011231	lncRNA gene	Chr16:47220346-47254077 (+)
FVB/NJ	ENSMUSG00205012848	lncRNA gene	Chr16:47126696-47160097 (+)
JF1/MsJ	ENSUMUG00000032508	lncRNA gene	Chr16:47442486-47475495 (+)
LP/J	ENSMUSG00230029162	lncRNA gene	Chr16:49782472-49816149 (+)
NOD/ShiLtJ	ENSMUSG00190019686	lncRNA gene	Chr16:47255532-47288917 (+)
NZO/HlLtJ	ENSMUSG00225026145	lncRNA gene	Chr16:52877699-52911418 (+)
PWK/PhJ	ENSLUMG00010028606	lncRNA gene	Chr16:47272556-47305223 (+)
SPRET/EiJ	ENSMSPG00010007636	lncRNA gene	Chr16:47542312-47573345 (+)
WSB/EiJ	ENSIUOG00005013316	lncRNA gene	Chr16:47428206-47461918 (+)

Homology

• Gene Tree
  G730013B05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000097694 (Evidence)
• NCBI Gene
  619312

Representative Sequences			Length	Strain/Species
genomic	619312	NCBI Gene Model | MGI Sequence Detail	33215	C57BL/6J
transcript	NR_040379	RefSeq | MGI Sequence Detail	2733	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:176229 Guttman M, et al., lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature. 2011 Sep 15;477(7364):295-300

TSS for G730013B05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138756	Chr16:50346576-50346589 (+)	-25 bp
Tssr138758	Chr16:50372470-50372484 (+)	25,869 bp