F830208F22Rik Gene Detail

Summary

• Symbol
  F830208F22Rik
• Name
  RIKEN cDNA F830208F22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588261
  NCBI Gene: 619308
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:77880959-77884090 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 52.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588261	lncRNA gene	Chr18:77880959-77884443 (-)
129S1/SvImJ	ENSMUSG00200029561	lncRNA gene	Chr18:75118410-75121918 (-)
A/J	ENSMUSG00195005131	lncRNA gene	Chr18:75168876-75172360 (-)
AKR/J	ENSMUSG00220017420	lncRNA gene	Chr18:75110594-75114078 (-)
BALB/cJ	ENSMUSG00180013795	lncRNA gene	Chr18:75739331-75742815 (-)
C3H/HeJ	ENSMUSG00175012686	lncRNA gene	Chr18:75290999-75294483 (-)
C57BL/6NJ	ENSMUSG00215029732	lncRNA gene	Chr18:74647115-74650599 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013504	unclassified non-coding RNA gene	Chr18:74144645-74148566 (-)
CAST/EiJ	ENSTCUG00005030319	lncRNA gene	Chr18:74192344-74195853 (-)
CBA/J	ENSMUSG00210034820	lncRNA gene	Chr18:75248292-75251776 (-)
DBA/2J	ENSMUSG00185011837	lncRNA gene	Chr18:75153843-75157327 (-)
FVB/NJ	ENSMUSG00205018863	lncRNA gene	Chr18:74772394-74775879 (-)
JF1/MsJ	ENSUMUG00000035124	lncRNA gene	Chr18:75079771-75083283 (-)
LP/J	ENSMUSG00230014652	lncRNA gene	Chr18:77224836-77228344 (-)
NOD/ShiLtJ	ENSMUSG00190023817	lncRNA gene	Chr18:74911516-74915000 (-)
NZO/HlLtJ	ENSMUSG00225034427	lncRNA gene	Chr18:77085882-77089366 (-)
PWK/PhJ	ENSLUMG00010007109	lncRNA gene	Chr18:75477444-75480956 (-)
SPRET/EiJ	ENSMSPG00010009581	lncRNA gene	Chr18:75747332-75750821 (-)
WSB/EiJ	ENSIUOG00005008022	lncRNA gene	Chr18:74641458-74644942 (-)

Homology

• Gene Tree
  F830208F22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving F830208F22Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1
• CCDS
  CCDS29359.1

• Ensembl
  ENSMUSG00000073529 (Evidence)
• NCBI Gene
  619308

Representative Sequences			Length	Strain/Species
genomic	619308	NCBI Gene Model | MGI Sequence Detail	3132	C57BL/6J
transcript	NR_152167	RefSeq | MGI Sequence Detail	2355	C57BL/6
polypeptide	Q3T9K4	UniProt | EBI | MGI Sequence Detail	177	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for F830208F22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153961	Chr18:77883914-77883926 (-)	170 bp