C130040N14Rik Gene Detail

Summary

• Symbol
  C130040N14Rik
• Name
  RIKEN cDNA C130040N14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588257
  NCBI Gene: 619324
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:27783692-27785196 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588257	lncRNA gene	Chr17:27783692-27785196 (+)
129S1/SvImJ	ENSMUSG00200054258	lncRNA gene	Chr17:23445962-23447072 (+)
A/J	ENSMUSG00195054420	lncRNA gene	Chr17:24260746-24261856 (+)
AKR/J	ENSMUSG00220054007	lncRNA gene	Chr17:23308380-23309490 (+)
BALB/cJ	ENSMUSG00180052159	lncRNA gene	Chr17:23742809-23743919 (+)
C3H/HeJ	ENSMUSG00175053757	lncRNA gene	Chr17:23296883-23297993 (+)
C57BL/6NJ	ENSMUSG00215054345	lncRNA gene	Chr17:23294681-23295791 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052061	lncRNA gene	Chr17:24019664-24020766 (+)
CBA/J	ENSMUSG00210051147	lncRNA gene	Chr17:23135330-23136440 (+)
DBA/2J	ENSMUSG00185054756	lncRNA gene	Chr17:25348944-25350054 (+)
FVB/NJ	ENSMUSG00205053485	lncRNA gene	Chr17:23611744-23612854 (+)
JF1/MsJ	ENSUMUG00000057830	lncRNA gene	Chr17:24802464-24803573 (+)
LP/J	ENSMUSG00230055175	lncRNA gene	Chr17:26871826-26872936 (+)
NOD/ShiLtJ	ENSMUSG00190054435	lncRNA gene	Chr17:23242170-23243280 (+)
NZO/HlLtJ	ENSMUSG00225054483	lncRNA gene	Chr17:28836090-28837200 (+)
PWK/PhJ	ENSLUMG00010053366	lncRNA gene	Chr17:22722991-22724100 (+)
SPRET/EiJ	ENSMSPG00010050464	lncRNA gene	Chr17:24025696-24026806 (+)
WSB/EiJ	ENSIUOG00005051288	lncRNA gene	Chr17:24000207-24001317 (+)

Homology

• Gene Tree
  C130040N14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving C130040N14Rik
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  1

• Ensembl
  ENSMUSG00000116884 (Evidence)
• NCBI Gene
  619324

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116884	Ensembl Gene Model | MGI Sequence Detail	1505	C57BL/6J
transcript	ENSMUST00000231648	Ensembl | MGI Sequence Detail	1111	Not Applicable
polypeptide	Q3US44	UniProt | EBI | MGI Sequence Detail	331	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044