6030469F06Rik Gene Detail

Summary

• Symbol
  6030469F06Rik
• Name
  RIKEN cDNA 6030469F06 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3588235
  NCBI Gene: 100043065
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:31218861-31235921 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 13.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  664 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588235	lncRNA gene	Chr12:31192759-31251084 (+)
129S1/SvImJ	ENSMUSG00200015521	pseudogene	Chr12:22997648-23055846 (+)
129S1/SvImJ	ENSMUSG00200014968	protein coding gene	Chr12:23023590-23040268 (+)
A/J	ENSMUSG00195022845	pseudogene	Chr12:25674820-25730807 (+)
AKR/J	ENSMUSG00220032079	pseudogene	Chr12:23643330-23699298 (+)
BALB/cJ	ENSMUSG00180025954	pseudogene	Chr12:24673988-24729946 (+)
C3H/HeJ	ENSMUSG00175022792	pseudogene	Chr12:27707386-27763357 (+)
C57BL/6NJ	ENSMUSG00215011410	protein coding gene	Chr12:24144499-24161187 (+)
C57BL/6NJ	ENSMUSG00215024074	pseudogene	Chr12:24118454-24176768 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017673	protein coding gene	Chr12:27597800-27598354 (+)
CAST/EiJ	ENSTCUG00005010351	pseudogene	Chr12:24480217-24536342 (+)
CBA/J	ENSMUSG00210008486	pseudogene	Chr12:24196712-24252677 (+)
DBA/2J	ENSMUSG00185015782	pseudogene	Chr12:26231737-26289928 (+)
DBA/2J	ENSMUSG00185014327	protein coding gene	Chr12:26257656-26274341 (+)
FVB/NJ	ENSMUSG00205005999	protein coding gene	Chr12:24289040-24305729 (+)
FVB/NJ	ENSMUSG00205006393	pseudogene	Chr12:24262964-24321303 (+)
JF1/MsJ	ENSUMUG00000011715	pseudogene	Chr12:30411039-30466610 (+)
LP/J	ENSMUSG00230023977	pseudogene	Chr12:33191735-33250056 (+)
LP/J	ENSMUSG00230021006	protein coding gene	Chr12:33217795-33234482 (+)
NOD/ShiLtJ	ENSMUSG00190019866	pseudogene	Chr12:23168267-23226605 (+)
NOD/ShiLtJ	ENSMUSG00190017449	protein coding gene	Chr12:23194311-23211026 (+)
NZO/HlLtJ	ENSMUSG00225030252	protein coding gene	Chr12:35412553-35429240 (+)
NZO/HlLtJ	ENSMUSG00225031523	pseudogene	Chr12:35386508-35444821 (+)
PWK/PhJ	ENSLUMG00010011165	pseudogene	Chr12:24648068-24703288 (+)
SPRET/EiJ	ENSMSPG00010006251	pseudogene	Chr12:25146720-25202424 (+)
WSB/EiJ	ENSIUOG00005022303	pseudogene	Chr12:23880817-23939030 (+)

Homology

• Gene Tree
  6030469F06Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000095953 (Evidence)
• NCBI Gene
  100043065

Representative Sequences			Length	Strain/Species
genomic	100043065	NCBI Gene Model | MGI Sequence Detail	17061	C57BL/6J
transcript	NR_102715	RefSeq | MGI Sequence Detail	1558	C57BL/6
polypeptide	Q3UYS9	UniProt | EBI | MGI Sequence Detail	184	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 6030469F06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113104	Chr12:31218844-31218869 (+)	-4 bp