9230009I02Rik Gene Detail

Summary

• Symbol
  9230009I02Rik
• Name
  RIKEN cDNA 9230009I02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588229
  NCBI Gene: 619293
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:50975914-50982662 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 30.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  434 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588229	lncRNA gene	Chr11:50975532-50982671 (+)
129S1/SvImJ	ENSMUSG00200040544	lncRNA gene	Chr11:47962674-47969582 (+)
A/J	ENSMUSG00195038483	lncRNA gene	Chr11:47905674-47912591 (+)
AKR/J	ENSMUSG00220041712	lncRNA gene	Chr11:48094530-48101435 (+)
BALB/cJ	ENSMUSG00180037715	lncRNA gene	Chr11:47967155-47974067 (+)
C3H/HeJ	ENSMUSG00175039121	lncRNA gene	Chr11:47937219-47944131 (+)
C57BL/6NJ	ENSMUSG00215036965	lncRNA gene	Chr11:47885780-47892688 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004736	lincRNA gene	Chr11:45990180-45996552 (+)
CAST/EiJ	ENSTCUG00005044941	lncRNA gene	Chr11:47517471-47524388 (+)
CBA/J	ENSMUSG00210030068	lncRNA gene	Chr11:47793218-47800126 (+)
DBA/2J	ENSMUSG00185029133	lncRNA gene	Chr11:48014132-48020898 (+)
FVB/NJ	ENSMUSG00205039775	lncRNA gene	Chr11:47835569-47842482 (+)
JF1/MsJ	ENSUMUG00000043530	lncRNA gene	Chr11:48344003-48350871 (+)
LP/J	ENSMUSG00230033642	lncRNA gene	Chr11:49186461-49193369 (+)
NOD/ShiLtJ	ENSMUSG00190044725	lncRNA gene	Chr11:48078248-48085030 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036555	lncRNA gene	Chr11:47816708-47823581 (+)
SPRET/EiJ	ENSMSPG00010019893	lncRNA gene	Chr11:48482337-48489033 (+)
WSB/EiJ	ENSIUOG00005041071	lncRNA gene	Chr11:47850757-47857627 (+)

Homology

• Gene Tree
  9230009I02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9230009I02Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000072982 (Evidence)
• NCBI Gene
  619293

Representative Sequences			Length	Strain/Species
genomic	619293	NCBI Gene Model | MGI Sequence Detail	6749	C57BL/6J
transcript	NR_045865	RefSeq | MGI Sequence Detail	1150	C57BL/6
polypeptide	Q3UW44	UniProt | EBI | MGI Sequence Detail	168	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563