D330025C20Rik Gene Detail

Summary

• Symbol
  D330025C20Rik
• Name
  RIKEN cDNA D330025C20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588219
  NCBI Gene: 665054
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:80405996-80409041 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588219	lncRNA gene	Chr18:80405996-80409042 (+)
129S1/SvImJ	ENSMUSG00200028793	unclassified gene	Chr18:77623055-77626100 (+)
A/J	ENSMUSG00195004945	unclassified gene	Chr18:77707308-77710353 (+)
AKR/J	ENSMUSG00220017930	unclassified gene	Chr18:77650806-77653863 (+)
BALB/cJ	ENSMUSG00180013605	unclassified gene	Chr18:78277553-78280598 (+)
C3H/HeJ	ENSMUSG00175012967	unclassified gene	Chr18:77823112-77826157 (+)
C57BL/6NJ	ENSMUSG00215024504	unclassified gene	Chr18:77185339-77188384 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000782	unclassified gene	Chr18:76581726-76584773 (+)
CAST/EiJ	ENSTCUG00005029549	unclassified gene	Chr18:76739918-76742976 (+)
CBA/J	ENSMUSG00210036582	unclassified gene	Chr18:77773694-77776739 (+)
DBA/2J	ENSMUSG00185012033	unclassified gene	Chr18:77678928-77681973 (+)
FVB/NJ	ENSMUSG00205018955	unclassified gene	Chr18:77100377-77103422 (+)
JF1/MsJ	ENSUMUG00000035287	unclassified gene	Chr18:77589470-77592526 (+)
LP/J	ENSMUSG00230013409	unclassified gene	Chr18:79729341-79732386 (+)
NOD/ShiLtJ	ENSMUSG00190025300	unclassified gene	Chr18:77479643-77482688 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010007148	unclassified gene	Chr18:77977763-77980820 (+)
SPRET/EiJ	ENSMSPG00010009850	unclassified gene	Chr18:78345766-78348843 (+)
WSB/EiJ	ENSIUOG00005008148	unclassified gene	Chr18:77155925-77158970 (+)

Homology

• Gene Tree
  D330025C20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving D330025C20Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102260 (Evidence)
• NCBI Gene
  665054

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102260	Ensembl Gene Model | MGI Sequence Detail	3046	C57BL/6J
transcript	NR_168057	RefSeq | MGI Sequence Detail	3047	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for D330025C20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152106	Chr18:80405992-80405997 (+)	-1 bp