Stxbp3-ps Pseudogene Detail

Summary

• Symbol
  Stxbp3-ps
• Name
  syntaxin-binding protein 3, pseudogene
• Synonyms
  Munc18c(L), Stxbp3b

• Feature Type
  pseudogene
• IDs
  MGI:3586869
  NCBI Gene: 619371
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:9535156-9536547 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 6.10 cM, cytoband B
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3586869	pseudogene	Chr19:9534970-9536612 (-)
129S1/SvImJ	ENSMUSG00200053178	pseudogene	Chr19:6299285-6300676 (-)
A/J	ENSMUSG00195054139	pseudogene	Chr19:6423678-6425069 (-)
AKR/J	ENSMUSG00220051465	pseudogene	Chr19:6339557-6340948 (-)
BALB/cJ	ENSMUSG00180052014	pseudogene	Chr19:6787664-6789055 (-)
C3H/HeJ	ENSMUSG00175014996	pseudogene	Chr19:6061375-6062766 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045248	pseudogene	Chr19:5991991-5993383 (-)
CBA/J	ENSMUSG00210050893	pseudogene	Chr19:6052181-6053572 (+)
DBA/2J	ENSMUSG00185053054	pseudogene	Chr19:6670572-6671963 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230054354	pseudogene	Chr19:7587538-7588929 (-)
NOD/ShiLtJ	ENSMUSG00190053189	pseudogene	Chr19:8830045-8831436 (-)
NZO/HlLtJ	ENSMUSG00225046758	pseudogene	Chr19:11296361-11297752 (-)
PWK/PhJ	ENSLUMG00010008703	pseudogene	Chr19:6099822-6101209 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051370	pseudogene	Chr19:5777160-5778551 (-)

Homology

• Gene Tree
  Stxbp3-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000071640 (Evidence)
• NCBI Gene
  619371

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071640	Ensembl Gene Model | MGI Sequence Detail	1392	C57BL/6J
transcript	ENSMUST00000090527	Ensembl | MGI Sequence Detail	758	Not Applicable
polypeptide	Q45Z54	UniProt | EBI | MGI Sequence Detail	273	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR043154 Sec1-like, domain 1
  IPR027482 Sec1-like, domain 2
  IPR001619 Sec1-like protein
  IPR036045 Sec1-like superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:100033 Schlaepfer IR, et al., Cloning and characterization of Munc18c(L), a novel murine Munc18c gene paralog. Biochem Biophys Res Commun. 2005 Sep 2;334(3):911-6
• Latest
  J:157637 Jewell JL, et al., Exocytosis mechanisms underlying insulin release and glucose uptake: conserved roles for Munc18c and syntaxin 4. Am J Physiol Regul Integr Comp Physiol. 2010 Mar;298(3):R517-31

TSS for Stxbp3-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158102	Chr19:9536568-9536612 (-)	-43 bp