Gm1968 Gene Detail

Summary

• Symbol
  Gm1968
• Name
  predicted gene 1968

• Feature Type
  lncRNA gene
• IDs
  MGI:3584525
  NCBI Gene: 328657
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:29776745-29797942 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 21.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3584525	lncRNA gene	Chr16:29776745-29798002 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022707	protein coding gene	Chr16:27818309-27822119 (-)
A/J	MGP_AJ_G0022670	protein coding gene	Chr16:26547389-26551199 (-)
AKR/J	MGP_AKRJ_G0022644	protein coding gene	Chr16:27554139-27557949 (-)
BALB/cJ	MGP_BALBcJ_G0022674	protein coding gene	Chr16:26728697-26732507 (-)
C3H/HeJ	MGP_C3HHeJ_G0022439	protein coding gene	Chr16:27654905-27658719 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023123	protein coding gene	Chr16:28415938-28419752 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020641	protein coding gene	Chr16:26987347-26991134 (-)
CAST/EiJ	MGP_CASTEiJ_G0021967	protein coding gene	Chr16:27731784-27735624 (-)
CBA/J	MGP_CBAJ_G0022409	protein coding gene	Chr16:29623576-29627390 (-)
DBA/2J	MGP_DBA2J_G0022542	protein coding gene	Chr16:26428942-26432756 (-)
FVB/NJ	MGP_FVBNJ_G0022517	protein coding gene	Chr16:26398236-26402046 (-)
LP/J	MGP_LPJ_G0022609	protein coding gene	Chr16:27632501-27636311 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022536	protein coding gene	Chr16:29172350-29176164 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023135	protein coding gene	Chr16:27513937-27517771 (-)
PWK/PhJ	MGP_PWKPhJ_G0021706	protein coding gene	Chr16:26720314-26724193 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021537	protein coding gene	Chr16:27260905-27264748 (-)
WSB/EiJ	MGP_WSBEiJ_G0022011	protein coding gene	Chr16:27443658-27447496 (-)

Homology

• Gene Tree
  Gm1968
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Incidental Mutations
  APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000075286 (Evidence)
• NCBI Gene
  328657

Representative Sequences			Length	Strain/Species
genomic	328657	NCBI Gene Model | MGI Sequence Detail	21198	C57BL/6J
transcript	NR_037689	RefSeq | MGI Sequence Detail	982	C57BL/6
polypeptide	Q3T9I3	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:151566 Rochais F, et al., Hes1 is expressed in the second heart field and is required for outflow tract development. PLoS One. 2009;4(7):e6267