BC065397 Gene Detail

Summary

• Symbol
  BC065397
• Name
  cDNA sequence BC065397

• Feature Type
  lncRNA gene
• IDs
  MGI:3584520
  NCBI Gene: 436230
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:135643706-135704113 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 59.10 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1270 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3584520	lncRNA gene	ChrX:135642525-135704113 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015794	unclassified non-coding RNA gene	ChrX:134152875-134215359 (+)
A/J	MGP_AJ_G0015769	unclassified non-coding RNA gene	ChrX:133546715-133611207 (+)
AKR/J	MGP_AKRJ_G0015734	unclassified non-coding RNA gene	ChrX:137821005-137883764 (+)
BALB/cJ	MGP_BALBcJ_G0015732	unclassified non-coding RNA gene	ChrX:131949118-132010345 (+)
C3H/HeJ	MGP_C3HHeJ_G0015551	unclassified non-coding RNA gene	ChrX:134191697-134251046 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016187	unclassified non-coding RNA gene	ChrX:138048331-138109742 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013908	unclassified non-coding RNA gene	ChrX:125500851-125560673 (+)
CAST/EiJ	MGP_CASTEiJ_G0015110	unclassified non-coding RNA gene	ChrX:114983977-115047584 (+)
CBA/J	MGP_CBAJ_G0015531	unclassified non-coding RNA gene	ChrX:142301210-142368141 (+)
DBA/2J	MGP_DBA2J_G0015629	unclassified non-coding RNA gene	ChrX:132849623-132917876 (+)
FVB/NJ	MGP_FVBNJ_G0015634	unclassified non-coding RNA gene	ChrX:132058364-132117748 (+)
LP/J	MGP_LPJ_G0015712	unclassified non-coding RNA gene	ChrX:135122503-135184353 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015659	unclassified non-coding RNA gene	ChrX:149593027-149654311 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016232	unclassified non-coding RNA gene	ChrX:133522586-133588382 (+)
PWK/PhJ	MGP_PWKPhJ_G0014889	unclassified non-coding RNA gene	ChrX:112013635-112073392 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014675	unclassified non-coding RNA gene	ChrX:115609015-115672813 (+)
WSB/EiJ	MGP_WSBEiJ_G0015210	unclassified non-coding RNA gene	ChrX:131841101-131902434 (+)

Homology

• Gene Tree
  BC065397
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  11
• Gene trapped
  10
• Targeted
  1
• Genomic Mutations
  1 involving BC065397
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087368 (Evidence)
• NCBI Gene
  436230

Representative Sequences			Length	Strain/Species
genomic	436230	NCBI Gene Model | MGI Sequence Detail	60408	C57BL/6J
transcript	NR_033324	RefSeq | MGI Sequence Detail	3243	C57BL/6
polypeptide	Q8BJE4	UniProt | EBI | MGI Sequence Detail	141	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2148084

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:199809 Clark K, et al., Gait abnormalities and progressive myelin degeneration in a new murine model of pelizaeus-merzbacher disease with tandem genomic duplication. J Neurosci. 2013 Jul 17;33(29):11788-99

TSS for BC065397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162050	ChrX:135642570-135642613 (+)	-1,114 bp
Tssr162051	ChrX:135689210-135689253 (+)	45,526 bp