BC065397 Gene Detail

Summary

• Symbol
  BC065397
• Name
  cDNA sequence BC065397

• Feature Type
  lncRNA gene
• IDs
  MGI:3584520
  NCBI Gene: 436230
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:135643706-135704113 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 59.10 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1270 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3584520	lncRNA gene	ChrX:135642525-135704113 (+)
129S1/SvImJ	ENSMUSG00200047544	lncRNA gene	ChrX:114637916-114699462 (+)
A/J	ENSMUSG00195048271	lncRNA gene	ChrX:118502273-118563822 (+)
AKR/J	ENSMUSG00220034040	protein coding gene	ChrX:111950647-112012085 (+)
AKR/J	ENSMUSG00220040565	lncRNA gene	ChrX:111950671-112012216 (+)
BALB/cJ	ENSMUSG00180038072	lncRNA gene	ChrX:114935451-114997002 (+)
C3H/HeJ	ENSMUSG00175035016	lncRNA gene	ChrX:118786536-118852486 (+)
C57BL/6NJ	ENSMUSG00215045370	lncRNA gene	ChrX:115345215-115406760 (+)
C57BL/6NJ	ENSMUSG00215044197	protein coding gene	ChrX:115345191-115406629 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013908	unclassified non-coding RNA gene	ChrX:125500851-125560673 (+)
CAST/EiJ	ENSTCUG00005041565	lncRNA gene	ChrX:116018297-116078300 (+)
CBA/J	ENSMUSG00210041762	lncRNA gene	ChrX:115721524-115787463 (+)
DBA/2J	ENSMUSG00185031170	lncRNA gene	ChrX:129613055-129678998 (+)
FVB/NJ	ENSMUSG00205026787	protein coding gene	ChrX:114107806-114169252 (+)
FVB/NJ	ENSMUSG00205036976	lncRNA gene	ChrX:114107830-114169383 (+)
JF1/MsJ	ENSUMUG00000029665	lncRNA gene	ChrX:148825932-148885771 (+)
LP/J	ENSMUSG00230040569	lncRNA gene	ChrX:136246543-136308088 (+)
NOD/ShiLtJ	ENSMUSG00190043103	lncRNA gene	ChrX:115111427-115177372 (+)
NZO/HlLtJ	ENSMUSG00225036981	lncRNA gene	ChrX:140927021-140992979 (+)
PWK/PhJ	ENSLUMG00010044030	lncRNA gene	ChrX:113575606-113635512 (+)
SPRET/EiJ	ENSMSPG00010039722	lncRNA gene	ChrX:118139960-118199861 (+)
WSB/EiJ	ENSIUOG00005039902	lncRNA gene	ChrX:115780149-115846091 (+)

Homology

• Gene Tree
  BC065397
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  11
• Gene trapped
  10
• Targeted
  1
• Genomic Mutations
  1 involving BC065397
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  66
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087368 (Evidence)
• NCBI Gene
  436230

Representative Sequences			Length	Strain/Species
genomic	436230	NCBI Gene Model | MGI Sequence Detail	60408	C57BL/6J
transcript	NR_033324	RefSeq | MGI Sequence Detail	3243	C57BL/6
polypeptide	Q8BJE4	UniProt | EBI | MGI Sequence Detail	141	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2148084

References

• Summaries
  All 18

  Diseases 1

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:199809 Clark K, et al., Gait abnormalities and progressive myelin degeneration in a new murine model of pelizaeus-merzbacher disease with tandem genomic duplication. J Neurosci. 2013 Jul 17;33(29):11788-99

TSS for BC065397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162050	ChrX:135642570-135642613 (+)	-1,114 bp
Tssr162051	ChrX:135689210-135689253 (+)	45,526 bp