4933431E20Rik Gene Detail

Summary

• Symbol
  4933431E20Rik
• Name
  RIKEN cDNA 4933431E20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3584041
  NCBI Gene: 329735
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:107796166-107803529 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3584041	lncRNA gene	Chr3:107796166-107818661 (-)
129S1/SvImJ	ENSMUSG00200036035	lncRNA gene	Chr3:104411932-104419295 (-)
129S1/SvImJ	ENSMUSG00200034983	protein coding gene	Chr3:104411676-104433138 (-)
A/J	ENSMUSG00195026017	lncRNA gene	Chr3:104838347-104845714 (-)
A/J	ENSMUSG00195023955	protein coding gene	Chr3:104838091-104859558 (-)
AKR/J	ENSMUSG00220029385	protein coding gene	Chr3:103201708-103223171 (-)
AKR/J	ENSMUSG00220032367	lncRNA gene	Chr3:103201964-103209327 (-)
BALB/cJ	ENSMUSG00180019217	lncRNA gene	Chr3:104789662-104797036 (-)
BALB/cJ	ENSMUSG00180017359	protein coding gene	Chr3:104789406-104810881 (-)
C3H/HeJ	ENSMUSG00175028227	protein coding gene	Chr3:104318222-104327098 (-)
C3H/HeJ	ENSMUSG00175029710	lncRNA gene	Chr3:104318478-104325841 (-)
C57BL/6NJ	ENSMUSG00215031432	lncRNA gene	Chr3:105046344-105053707 (-)
C57BL/6NJ	ENSMUSG00215020824	protein coding gene	Chr3:105046088-105067551 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003425	antisense lncRNA gene	Chr3:102089504-102097748 (-)
CAST/EiJ	ENSTCUG00005027445	lncRNA gene	Chr3:105323540-105331032 (-)
CBA/J	ENSMUSG00210008716	lncRNA gene	Chr3:104940354-104947717 (-)
CBA/J	ENSMUSG00210007842	protein coding gene	Chr3:104940098-104961560 (-)
DBA/2J	ENSMUSG00185021907	protein coding gene	Chr3:105409419-105430881 (-)
DBA/2J	ENSMUSG00185023236	lncRNA gene	Chr3:105409675-105417038 (-)
FVB/NJ	ENSMUSG00205028974	lncRNA gene	Chr3:103973469-103980832 (-)
FVB/NJ	ENSMUSG00205027478	protein coding gene	Chr3:103973213-103994676 (-)
JF1/MsJ	ENSUMUG00000005937	lncRNA gene	Chr3:104377791-104385267 (-)
LP/J	ENSMUSG00230017252	protein coding gene	Chr3:107324687-107346149 (-)
LP/J	ENSMUSG00230020059	lncRNA gene	Chr3:107324943-107332306 (-)
NOD/ShiLtJ	ENSMUSG00190024800	protein coding gene	Chr3:105647500-105668962 (-)
NOD/ShiLtJ	ENSMUSG00190038103	lncRNA gene	Chr3:105647756-105655119 (-)
NZO/HlLtJ	ENSMUSG00225021057	lncRNA gene	Chr3:109823342-109830838 (-)
PWK/PhJ	ENSLUMG00010025437	lncRNA gene	Chr3:104234109-104241591 (-)
SPRET/EiJ	ENSMSPG00010035434	lncRNA gene	Chr3:104755671-104763252 (-)
WSB/EiJ	ENSIUOG00005004841	lncRNA gene	Chr3:104962199-104969568 (-)

Homology

• Gene Tree
  4933431E20Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  3 involving 4933431E20Rik
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  28

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000086968 (Evidence)
• NCBI Gene
  329735

Representative Sequences			Length	Strain/Species
genomic	329735	NCBI Gene Model | MGI Sequence Detail	7364	C57BL/6J
transcript	NR_015459	RefSeq | MGI Sequence Detail	5428	C57BL/6
polypeptide	Q3UYJ0	UniProt | EBI | MGI Sequence Detail	150	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 31

  Genomic 2

  cDNA 29

  
  

  Microarray probesets 3

References

• Summaries
  All 22

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4933431E20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35092	Chr3:107803122-107803133 (-)	401 bp
Tssr35091	Chr3:107803070-107803121 (-)	433 bp
Tssr35090	Chr3:107803059-107803066 (-)	466 bp