A330069E16Rik Gene Detail

Summary

• Symbol
  A330069E16Rik
• Name
  RIKEN cDNA A330069E16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3583899
  NCBI Gene: 606735
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:91067491-91068702 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3583899	lncRNA gene	Chr2:91066839-91084582 (+)
129S1/SvImJ	ENSMUSG00200054273	lncRNA gene	Chr2:87983023-88000049 (+)
A/J	ENSMUSG00195053989	lncRNA gene	Chr2:88109985-88126840 (+)
AKR/J	ENSMUSG00220053097	lncRNA gene	Chr2:87912801-87929835 (+)
BALB/cJ	ENSMUSG00180054871	lncRNA gene	Chr2:88010203-88027058 (+)
C3H/HeJ	ENSMUSG00175054167	lncRNA gene	Chr2:88278791-88295817 (+)
C57BL/6NJ	ENSMUSG00215053965	lncRNA gene	Chr2:88110188-88127225 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052791	lncRNA gene	Chr2:87518665-87536250 (+)
CBA/J	ENSMUSG00210041196	lncRNA gene	Chr2:88289932-88306957 (+)
DBA/2J	ENSMUSG00185057213	lncRNA gene	Chr2:88006609-88023459 (+)
FVB/NJ	ENSMUSG00205052267	lncRNA gene	Chr2:87303084-87320118 (+)
JF1/MsJ	ENSUMUG00000034893	lncRNA gene	Chr2:87824160-87841216 (+)
LP/J	ENSMUSG00230046379	lncRNA gene	Chr2:89757274-89774128 (+)
NOD/ShiLtJ	ENSMUSG00190052420	lncRNA gene	Chr2:88085373-88102227 (+)
NZO/HlLtJ	ENSMUSG00225053957	lncRNA gene	Chr2:97678933-97695785 (+)
PWK/PhJ	ENSLUMG00010052658	lncRNA gene	Chr2:87812793-87829801 (+)
SPRET/EiJ	ENSMSPG00010052208	lncRNA gene	Chr2:89770412-89787392 (+)
WSB/EiJ	ENSIUOG00005053405	lncRNA gene	Chr2:87816179-87833032 (+)

Homology

• Gene Tree
  A330069E16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving A330069E16Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  1

• Ensembl
  ENSMUSG00000120340 (Evidence)
• NCBI Gene
  606735

Representative Sequences			Length	Strain/Species
genomic	606735	NCBI Gene Model | MGI Sequence Detail	1212	C57BL/6J
transcript	NR_015464	RefSeq | MGI Sequence Detail	949	FVB/N

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 18

  Gene Ontology 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for A330069E16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18884	Chr2:91067455-91067490 (+)	-18 bp
Tssr18885	Chr2:91067517-91067529 (+)	32 bp