Raxos1 Gene Detail

Summary

• Symbol
  Raxos1
• Name
  retina and anterior neural fold homeobox, opposite strand 1

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3583306
  NCBI Gene: 360222
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:66070609-66073518 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 39.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3583306	antisense lncRNA gene	Chr18:66070609-66073518 (+)
129S1/SvImJ	ENSMUSG00200025243	lncRNA gene	Chr18:63257154-63260063 (+)
A/J	ENSMUSG00195033000	lncRNA gene	Chr18:63296053-63298963 (+)
AKR/J	ENSMUSG00220023105	lncRNA gene	Chr18:63262944-63265854 (+)
BALB/cJ	ENSMUSG00180013021	lncRNA gene	Chr18:63863029-63865939 (+)
C3H/HeJ	ENSMUSG00175010542	lncRNA gene	Chr18:63469701-63472610 (+)
C57BL/6NJ	ENSMUSG00215018155	lncRNA gene	Chr18:62811387-62814296 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005269	lincRNA gene	Chr18:62678871-62681801 (+)
CAST/EiJ	ENSTCUG00005015986	lncRNA gene	Chr18:62471771-62474684 (+)
CBA/J	ENSMUSG00210031055	lncRNA gene	Chr18:63427400-63430309 (+)
DBA/2J	ENSMUSG00185030554	lncRNA gene	Chr18:63338417-63341326 (+)
FVB/NJ	ENSMUSG00205014183	lncRNA gene	Chr18:62805840-62808749 (+)
JF1/MsJ	ENSUMUG00000042528	lncRNA gene	Chr18:63234602-63237504 (+)
LP/J	ENSMUSG00230039517	lncRNA gene	Chr18:65390309-65393218 (+)
NOD/ShiLtJ	ENSMUSG00190008448	lncRNA gene	Chr18:63065171-63068080 (+)
NZO/HlLtJ	ENSMUSG00225030582	lncRNA gene	Chr18:65275485-65278394 (+)
PWK/PhJ	ENSLUMG00010027107	lncRNA gene	Chr18:63632223-63635131 (+)
SPRET/EiJ	ENSMSPG00010039712	lncRNA gene	Chr18:63780032-63782956 (+)
WSB/EiJ	ENSIUOG00005006393	lncRNA gene	Chr18:62862323-62865232 (+)

Homology

• Gene Tree
  Raxos1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000097907 (Evidence)
• NCBI Gene
  360222

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097907	Ensembl Gene Model | MGI Sequence Detail	2910	C57BL/6J
transcript	ENSMUST00000181100	Ensembl | MGI Sequence Detail	2547	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 4

  Primer pair 2

References

• Summaries
  All 10

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:98077 Alfano G, et al., Natural antisense transcripts associated with genes involved in eye development. Hum Mol Genet. 2005 Apr 1;14(7):913-23