Vax2os Gene Detail

Summary

• Symbol
  Vax2os
• Name
  ventral anterior homeobox 2, opposite strand
• Synonyms
  Vax2os1, Vax2os2

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3583301
  NCBI Gene: 574519
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr6:83669786-83689183 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 35.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  586 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3583301	antisense lncRNA gene	Chr6:83669786-83689190 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004299	antisense lncRNA gene	Chr6:84717005-84737931 (-)
A/J	MGP_AJ_G0004277	antisense lncRNA gene	Chr6:81498228-81517641 (-)
AKR/J	MGP_AKRJ_G0004259	antisense lncRNA gene	Chr6:83853713-83874982 (-)
BALB/cJ	MGP_BALBcJ_G0004263	antisense lncRNA gene	Chr6:81519130-81539922 (-)
C3H/HeJ	MGP_C3HHeJ_G0004242	antisense lncRNA gene	Chr6:100529665-100548637 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004412	antisense lncRNA gene	Chr6:87061845-87083301 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003886	antisense lncRNA gene	Chr6:79859999-79878778 (-)
CAST/EiJ	MGP_CASTEiJ_G0004173	antisense lncRNA gene	Chr6:83876503-83897949 (-)
CBA/J	MGP_CBAJ_G0004205	antisense lncRNA gene	Chr6:90486520-90511066 (-)
DBA/2J	MGP_DBA2J_G0004221	antisense lncRNA gene	Chr6:80809283-80829279 (-)
FVB/NJ	MGP_FVBNJ_G0004237	antisense lncRNA gene	Chr6:80020876-80041761 (-)
LP/J	MGP_LPJ_G0004300	antisense lncRNA gene	Chr6:84723374-84742420 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004228	antisense lncRNA gene	Chr6:94755244-94775194 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004410	antisense lncRNA gene	Chr6:83679156-83707606 (-)
PWK/PhJ	MGP_PWKPhJ_G0004126	antisense lncRNA gene	Chr6:79725259-79746100 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004070	antisense lncRNA gene	Chr6:82506621-82527143 (-)
WSB/EiJ	MGP_WSBEiJ_G0004210	antisense lncRNA gene	Chr6:84099408-84120602 (-)

Homology

• Gene Tree
  Vax2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Endonuclease-mediated
  1
• Gene trapped
  3
• Spontaneous
  1
• Genomic Mutations
  2 involving Vax2os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  776
• Tissues
  25
• cDNA Data
  3
• Literature Summary
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  2

• Ensembl
  ENSMUSG00000085794 (Evidence)
• NCBI Gene
  574519

Representative Sequences			Length	Strain/Species
genomic	574519	NCBI Gene Model | MGI Sequence Detail	19398	C57BL/6J
transcript	NR_075094	RefSeq | MGI Sequence Detail	1863	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 3

  Primer pair 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3583303

References

• Summaries
  All 21

  Developmental Gene Expression 3

  Phenotypes 8
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Vax2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61702	Chr6:83687832-83687847 (-)	1,343 bp
Tssr61701	Chr6:83680523-83680536 (-)	8,653 bp
Tssr61700	Chr6:83680510-83680515 (-)	8,670 bp
Tssr61699	Chr6:83680490-83680496 (-)	8,690 bp
Tssr61698	Chr6:83675063-83675085 (-)	14,109 bp