Trcg1 Gene Detail

Summary

• Symbol
  Trcg1
• Name
  taste receptor cell gene 1

• Feature Type
  protein coding gene
• IDs
  MGI:3576664
  NCBI Gene: 541610
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:57143839-57157147 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3576664	protein coding gene	Chr9:57143839-57157147 (+)
129S1/SvImJ	ENSMUSG00200032332	protein coding gene	Chr9:54271147-54284483 (+)
A/J	ENSMUSG00195036608	protein coding gene	Chr9:53969887-53983222 (+)
AKR/J	ENSMUSG00220025685	protein coding gene	Chr9:54107155-54120492 (+)
BALB/cJ	ENSMUSG00180015571	protein coding gene	Chr9:54083028-54096336 (+)
C3H/HeJ	ENSMUSG00175021467	protein coding gene	Chr9:54096696-54110031 (+)
C57BL/6NJ	ENSMUSG00215015435	protein coding gene	Chr9:54076375-54089684 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032265	protein coding gene	Chr9:53932479-53946174 (+)
CAST/EiJ	ENSTCUG00005021125	protein coding gene	Chr9:53990203-54003562 (+)
CBA/J	ENSMUSG00210033479	protein coding gene	Chr9:54198525-54211834 (+)
DBA/2J	ENSMUSG00185041345	protein coding gene	Chr9:54227075-54240409 (+)
FVB/NJ	ENSMUSG00205029654	protein coding gene	Chr9:54533853-54547192 (+)
JF1/MsJ	ENSUMUG00000045015	protein coding gene	Chr9:54235023-54248336 (+)
LP/J	ENSMUSG00230036822	protein coding gene	Chr9:54470919-54484253 (+)
NOD/ShiLtJ	ENSMUSG00190030233	protein coding gene	Chr9:54295100-54308438 (+)
NZO/HlLtJ	ENSMUSG00225026804	protein coding gene	Chr9:54508285-54521620 (+)
PWK/PhJ	ENSLUMG00010033320	protein coding gene	Chr9:54197714-54211029 (+)
SPRET/EiJ	ENSMSPG00010021798	protein coding gene	Chr9:55232646-55246310 (+)
WSB/EiJ	ENSIUOG00005034213	protein coding gene	Chr9:53709072-53722353 (+)

Homology

• Gene Tree
  Trcg1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  25 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  635
• Tissues
  25
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS23218.1

• Ensembl
  ENSMUSG00000070298 (Evidence)
• NCBI Gene
  541610

Representative Sequences			Length	Strain/Species
genomic	541610	NCBI Gene Model | MGI Sequence Detail	13309	C57BL/6J
transcript	NM_001014398	RefSeq | MGI Sequence Detail	2727	C57BL/6
polypeptide	Q58Y74	UniProt | EBI | MGI Sequence Detail	825	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000016938 taste receptor cell protein 1
  (term hierarchy)
• InterPro Domains
  IPR062508 Taste receptor cell protein 1 middle domain

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582