Xlr3d-ps Pseudogene Detail

Summary

• Symbol
  Xlr3d-ps
• Name
  X-linked lymphocyte-regulated 3D, pseudogene
• Synonyms
  EG667382, Xlr3d

• Feature Type
  pseudogene
• IDs
  MGI:3574105
  NCBI Gene: 667382
• Member of
  Xlr3 cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:73739653-73747682 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.06 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3574105	pseudogene	ChrX:73739629-73748514 (+)
129S1/SvImJ	ENSMUSG00200043290	pseudogene	ChrX:55839669-55847700 (-)
A/J	ENSMUSG00195035361	pseudogene	ChrX:59476003-59484032 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180051299	pseudogene	ChrX:56050794-56058820 (+)
C3H/HeJ	ENSMUSG00175036178	pseudogene	ChrX:59667827-59667911 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043610	pseudogene	ChrX:57594441-57611354 (+)
CBA/J	ENSMUSG00210045793	pseudogene	ChrX:56328945-56329116 (+)
DBA/2J	ENSMUSG00185035988	pseudogene	ChrX:68769363-68769447 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000047312	pseudogene	ChrX:89655126-89663305 (-)
JF1/MsJ	ENSUMUG00000050372	pseudogene	ChrX:88008607-88016670 (+)
JF1/MsJ	ENSUMUG00000050506	pseudogene	ChrX:88049600-88057662 (-)
LP/J	ENSMUSG00230036785	pseudogene	ChrX:75404803-75412836 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225048843	pseudogene	ChrX:80526149-80534172 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010037909	pseudogene	ChrX:58393034-58399196 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Xlr3d-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2

• Ensembl
  ENSMUSG00000083847 (Evidence)
• NCBI Gene
  667382

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083847	Ensembl Gene Model | MGI Sequence Detail	8030	C57BL/6J
transcript	ENSMUST00000121687	Ensembl | MGI Sequence Detail	658	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGI:3643182

References

• Summaries
  All 9
• Earliest
  J:99307 Raefski AS, et al., Identification of a cluster of X-linked imprinted genes in mice. Nat Genet. 2005 Jun;37(6):620-4
• Latest
  J:99308 Davies W, et al., Xlr3b is a new imprinted candidate for X-linked parent-of-origin effects on cognitive function in mice. Nat Genet. 2005 Jun;37(6):625-9