AY702102 MGI Mouse Gene Detail - MGI:3525150

Symbol

AY702102
Name

cDNA sequence AY702102
Synonyms

STDP1

Feature Type

lncRNA gene
IDs

MGI:3525150
NCBI Gene: 446211
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr2:169803935-169805107 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 89.91 cM
Mapping Data

1 experiment

SNPs within 2kb

158 from dbSNP Build 142
Strain Annotations

30

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3525150	lncRNA gene	Chr2:169803933-169805107 (-)
129S1/SvImJ	ENSMUSG00200039329	protein coding gene	Chr2:166710709-166711899 (-)
129S1/SvImJ	ENSMUSG00200041103	unclassified gene	Chr2:166710707-166711879 (-)
A/J	ENSMUSG00195024831	protein coding gene	Chr2:167053916-167055106 (-)
A/J	ENSMUSG00195025997	unclassified gene	Chr2:167053914-167055086 (-)
AKR/J	ENSMUSG00220031553	protein coding gene	Chr2:166354869-166356059 (-)
AKR/J	ENSMUSG00220038092	unclassified gene	Chr2:166354867-166356039 (-)
BALB/cJ	ENSMUSG00180041114	unclassified gene	Chr2:166501970-166503142 (-)
BALB/cJ	ENSMUSG00180036938	protein coding gene	Chr2:166501972-166503162 (-)
C3H/HeJ	ENSMUSG00175046057	unclassified gene	Chr2:167274435-167275607 (-)
C3H/HeJ	ENSMUSG00175038498	protein coding gene	Chr2:167274437-167275627 (-)
C57BL/6NJ	ENSMUSG00215027994	protein coding gene	Chr2:166684730-166685920 (-)
C57BL/6NJ	ENSMUSG00215034016	unclassified gene	Chr2:166684728-166685900 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000864	unclassified gene	Chr2:161929579-161930749 (-)
CAST/EiJ	ENSTCUG00005009458	unclassified gene	Chr2:165589926-165591100 (-)
CBA/J	ENSMUSG00210045092	unclassified gene	Chr2:167182077-167183249 (-)
CBA/J	ENSMUSG00210040243	protein coding gene	Chr2:167182079-167183269 (-)
DBA/2J	ENSMUSG00185027388	unclassified gene	Chr2:166895964-166897136 (-)
DBA/2J	ENSMUSG00185025197	protein coding gene	Chr2:166895966-166897156 (-)
FVB/NJ	ENSMUSG00205015432	protein coding gene	Chr2:165929372-165930562 (-)
FVB/NJ	ENSMUSG00205027406	unclassified gene	Chr2:165929370-165930542 (-)
JF1/MsJ	ENSUMUG00000049827	unclassified gene	Chr2:166573443-166574615 (-)
LP/J	ENSMUSG00230012783	unclassified gene	Chr2:168471265-168472452 (-)
NOD/ShiLtJ	ENSMUSG00190027437	protein coding gene	Chr2:166587738-166588928 (-)
NOD/ShiLtJ	ENSMUSG00190046130	unclassified gene	Chr2:166587736-166588908 (-)
NZO/HlLtJ	ENSMUSG00225001925	protein coding gene	Chr2:176456611-176457801 (-)
NZO/HlLtJ	ENSMUSG00225003733	unclassified gene	Chr2:176456609-176457781 (-)
PWK/PhJ	ENSLUMG00010038403	unclassified gene	Chr2:166451985-166453157 (-)
SPRET/EiJ	ENSMSPG00010029790	unclassified gene	Chr2:169201443-169202616 (-)
WSB/EiJ	ENSIUOG00005026989	unclassified gene	Chr2:166295067-166296239 (-)

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Gene Tree

AY702102

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Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

4 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

5

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

38
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000103935 (Evidence)
NCBI Gene

446211

			Length	Strain/Species	Flank
genomic	ENSMUSG00000103935	Ensembl Gene Model \| MGI Sequence Detail	1173	C57BL/6J	± kb
transcript	NR_131974	RefSeq \| MGI Sequence Detail	1175	C57BL/6
polypeptide	Q66V79	UniProt \| EBI \| MGI Sequence Detail	117	Not Applicable

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UniProt

1 Sequence

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All nucleic 5

cDNA 5

Microarray probesets 2

Summaries

All 16
Earliest

J:97250 Hong S, et al., Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. J Biol Chem. 2005 Mar 4;280(9):7685-93

TSS for AY702102:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27900	Chr2:169805089-169805121 (-)	2 bp
Tssr27899	Chr2:169804995-169805002 (-)	108 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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