BC037156 Gene Detail

Summary

• Symbol
  BC037156
• Name
  cDNA sequence BC037156
• Synonyms
  FDC-SP

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3512757
  NCBI Gene: 494497
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:88056638-88062030 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3512757	protein coding gene	Chr5:88056638-88062030 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006690	lincRNA gene	Chr5:88882163-88887560 (+)
A/J	MGP_AJ_G0006684	lincRNA gene	Chr5:85252405-85257797 (+)
AKR/J	MGP_AKRJ_G0006654	lincRNA gene	Chr5:88074977-88080367 (+)
BALB/cJ	MGP_BALBcJ_G0006659	lincRNA gene	Chr5:86173117-86178489 (+)
C3H/HeJ	MGP_C3HHeJ_G0006605	lincRNA gene	Chr5:88478105-88483479 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006824	lincRNA gene	Chr5:92531219-92536599 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006528	lincRNA gene	Chr5:87872049-87877389 (+)
CBA/J	MGP_CBAJ_G0006586	lincRNA gene	Chr5:95453801-95459183 (+)
DBA/2J	MGP_DBA2J_G0006607	lincRNA gene	Chr5:85424586-85429970 (+)
FVB/NJ	MGP_FVBNJ_G0006631	lincRNA gene	Chr5:84331946-84337328 (+)
LP/J	MGP_LPJ_G0006691	lincRNA gene	Chr5:89292829-89298214 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006615	lincRNA gene	Chr5:100551309-100556745 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006826	lincRNA gene	Chr5:87644997-87650374 (+)
PWK/PhJ	MGP_PWKPhJ_G0006467	lincRNA gene	Chr5:84417719-84423058 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006373	lincRNA gene	Chr5:87060704-87066107 (+)
WSB/EiJ	MGP_WSBEiJ_G0006579	lincRNA gene	Chr5:88031048-88036404 (+)

Homology

• Gene Tree
  BC037156
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  9 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Targeted
  2
• Genomic Mutations
  4 involving BC037156
• Find Mice (IMSR)
  2 strains or lines available

Homozygous mice do not exhibit a notable mutant phenotype in any parameter tested.

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000105888 (Evidence)
• NCBI Gene
  494497

Representative Sequences			Length	Strain/Species
genomic	494497	NCBI Gene Model | MGI Sequence Detail	5393	C57BL/6J
transcript	NM_001305431	RefSeq | MGI Sequence Detail	430	ZRU/MplStud
polypeptide	NP_001292360	RefSeq | MGI Sequence Detail	84	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR029187 Follicular dendritic cell secreted peptide

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:307007 Hou S, et al., Follicular dendritic cell secreted protein FDC-SP controls IgA production. Mucosal Immunol. 2014 Jul;7(4):948-57

TSS for BC037156:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46937	Chr5:88056617-88056636 (+)	-11 bp