Fndc11 MGI Mouse Gene Detail - MGI:3051572 - fibronectin type III domain containing 11

Sequence Map

Chr2:180861806-180864647 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3051572	protein coding gene	Chr2:180854385-180864649 (+)
129S1/SvImJ	ENSMUSG00200001887	protein coding gene	Chr2:176884343-176887185 (+)
A/J	ENSMUSG00195001086	protein coding gene	Chr2:177116921-177119755 (+)
AKR/J	ENSMUSG00220000083	protein coding gene	Chr2:174795558-174798392 (+)
BALB/cJ	ENSMUSG00180000522	protein coding gene	Chr2:174923615-174926458 (+)
C3H/HeJ	ENSMUSG00175004347	protein coding gene	Chr2:176077496-176080330 (+)
C57BL/6NJ	ENSMUSG00215002499	protein coding gene	Chr2:175023842-175026686 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000705	protein coding gene	Chr2:174373983-174376814 (+)
CBA/J	ENSMUSG00210001015	protein coding gene	Chr2:175402178-175405020 (+)
DBA/2J	ENSMUSG00185019925	protein coding gene	Chr2:176636953-176639787 (+)
FVB/NJ	ENSMUSG00205002347	protein coding gene	Chr2:175453928-175456770 (+)
JF1/MsJ	ENSUMUG00000019325	protein coding gene	Chr2:177828675-177831511 (+)
LP/J	ENSMUSG00230021858	protein coding gene	Chr2:178535285-178538126 (+)
NOD/ShiLtJ	ENSMUSG00190015755	protein coding gene	Chr2:174943770-174946611 (+)
NZO/HlLtJ	ENSMUSG00225006198	protein coding gene	Chr2:186617918-186620758 (+)
PWK/PhJ	ENSLUMG00010000209	protein coding gene	Chr2:175248744-175251573 (+)
SPRET/EiJ	ENSMSPG00010003984	protein coding gene	Chr2:177722980-177725800 (+)
WSB/EiJ	ENSIUOG00005000086	protein coding gene	Chr2:174962820-174965660 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
6 phenotype references

Male mice homozygous for a mutation are viable and show normal fertility.

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000047841	Ensembl Gene Model \| MGI Sequence Detail	2842	C57BL/6J	± kb
transcript	ENSMUST00000108835	Ensembl \| MGI Sequence Detail	1154	Not Applicable
polypeptide	ENSMUSP00000104463	Ensembl \| MGI Sequence Detail	332	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000060055 fibronectin type III domain-containing protein 11

(term hierarchy)
InterPro Domains

IPR048317 DUF5581, Fn3-like domain

IPR049231 DUF5581, N-terminal domain

IPR003961 Fibronectin type III

IPR039581 Fibronectin type III domain-containing protein 11

IPR036116 Fibronectin type III superfamily

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MGI:1919116

Summaries

All 26

Phenotypes 6
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

TSS for Fndc11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22296	Chr2:180861791-180861848 (+)	14 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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