E130310I04Rik Gene Detail

Summary

• Symbol
  E130310I04Rik
• Name
  RIKEN cDNA E130310I04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3046461
  NCBI Gene: 278725
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr16:34763545-34779364 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 24.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  564 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3046461	lncRNA gene	Chr16:34763545-34779364 (-)
129S1/SvImJ	ENSMUSG00200030337	lncRNA gene	Chr16:31778569-31794420 (-)
A/J	ENSMUSG00195011357	lncRNA gene	Chr16:31329853-31345706 (-)
AKR/J	ENSMUSG00220030707	lncRNA gene	Chr16:31615785-31631638 (-)
BALB/cJ	ENSMUSG00180013417	lncRNA gene	Chr16:31545809-31561660 (-)
C3H/HeJ	ENSMUSG00175033077	lncRNA gene	Chr16:31674417-31690273 (-)
C57BL/6NJ	ENSMUSG00215027129	lncRNA gene	Chr16:31570740-31586593 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033403	lncRNA gene	Chr16:31944806-31960572 (-)
CBA/J	ENSMUSG00210029411	lncRNA gene	Chr16:31731581-31747436 (-)
DBA/2J	ENSMUSG00185025430	lncRNA gene	Chr16:31634717-31650570 (-)
FVB/NJ	ENSMUSG00205026847	lncRNA gene	Chr16:31678048-31693899 (-)
JF1/MsJ	ENSUMUG00000038982	lncRNA gene	Chr16:31836388-31852271 (-)
LP/J	ENSMUSG00230033222	lncRNA gene	Chr16:34206639-34222491 (-)
NOD/ShiLtJ	ENSMUSG00190023993	lncRNA gene	Chr16:31839056-31854899 (-)
NZO/HlLtJ	ENSMUSG00225039730	lncRNA gene	Chr16:37456640-37472489 (-)
PWK/PhJ	ENSLUMG00010031474	lncRNA gene	Chr16:31732248-31748105 (-)
SPRET/EiJ	ENSMSPG00010017643	lncRNA gene	Chr16:31664236-31680126 (-)
WSB/EiJ	ENSIUOG00005027398	lncRNA gene	Chr16:31803290-31819149 (-)

Homology

• Gene Tree
  E130310I04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000116665 (Evidence)
• NCBI Gene
  278725

Representative Sequences			Length	Strain/Species
genomic	278725	NCBI Gene Model | MGI Sequence Detail	15820	C57BL/6J
transcript	NR_045722	RefSeq | MGI Sequence Detail	3479	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for E130310I04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140890	Chr16:34779238-34779252 (-)	119 bp
Tssr140889	Chr16:34779214-34779233 (-)	140 bp
Tssr140888	Chr16:34779186-34779205 (-)	168 bp
Tssr140887	Chr16:34779172-34779183 (-)	186 bp
Tssr140886	Chr16:34763639-34763657 (-)	15,716 bp