E230014E18Rik Gene Detail

Summary

• Symbol
  E230014E18Rik
• Name
  RIKEN cDNA E230014E18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045388
  NCBI Gene: 442848
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:84350816-84359147 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  370 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045388	lncRNA gene	Chr10:84350816-84359147 (+)
129S1/SvImJ	ENSMUSG00200050653	lncRNA gene	Chr10:80844709-80849934 (+)
A/J	ENSMUSG00195050844	lncRNA gene	Chr10:81279416-81284641 (+)
AKR/J	ENSMUSG00220049624	lncRNA gene	Chr10:80888982-80894207 (+)
BALB/cJ	ENSMUSG00180053229	lncRNA gene	Chr10:81289697-81294923 (+)
C3H/HeJ	ENSMUSG00175052592	lncRNA gene	Chr10:81165659-81170884 (+)
C57BL/6NJ	ENSMUSG00215053437	lncRNA gene	Chr10:80841942-80847167 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052250	lncRNA gene	Chr10:80610871-80615958 (+)
CBA/J	ENSMUSG00210049996	lncRNA gene	Chr10:81016368-81021593 (+)
DBA/2J	ENSMUSG00185053941	lncRNA gene	Chr10:81225885-81231110 (+)
FVB/NJ	ENSMUSG00205051188	lncRNA gene	Chr10:80943487-80948712 (+)
JF1/MsJ	ENSUMUG00000024105	lncRNA gene	Chr10:82605320-82610490 (+)
LP/J	ENSMUSG00230019035	lncRNA gene	Chr10:83128188-83133413 (+)
NOD/ShiLtJ	ENSMUSG00190052936	lncRNA gene	Chr10:81272391-81277614 (+)
NZO/HlLtJ	ENSMUSG00225053851	lncRNA gene	Chr10:87399547-87404779 (+)
PWK/PhJ	ENSLUMG00010051642	lncRNA gene	Chr10:80905585-80910756 (+)
SPRET/EiJ	ENSMSPG00010032844	lncRNA gene	Chr10:82321126-82326130 (+)
WSB/EiJ	ENSIUOG00005051391	lncRNA gene	Chr10:80983839-80989060 (+)

Homology

• Gene Tree
  E230014E18Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000111514 (Evidence)
• NCBI Gene
  442848

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111514	Ensembl Gene Model | MGI Sequence Detail	8332	C57BL/6J
transcript	ENSMUST00000215920	Ensembl | MGI Sequence Detail	1079	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for E230014E18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94890	Chr10:84352574-84352579 (+)	1,761 bp
Tssr3295	Chr10:84353635-84353651 (+)	2,827 bp
Tssr94891	Chr10:84353851-84353869 (+)	3,044 bp