9230106D20Rik Gene Detail

Summary

• Symbol
  9230106D20Rik
• Name
  RIKEN cDNA 9230106D20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045371
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:19520498-19536549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 8.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  523 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045371	lncRNA gene	Chr10:19520498-19536549 (+)
129S1/SvImJ	ENSMUSG00200010299	lncRNA gene	Chr10:16517902-16533953 (+)
A/J	ENSMUSG00195006952	lncRNA gene	Chr10:16534213-16550266 (+)
AKR/J	ENSMUSG00220010127	lncRNA gene	Chr10:16439816-16455857 (+)
BALB/cJ	ENSMUSG00180015263	lncRNA gene	Chr10:16658432-16674487 (+)
C3H/HeJ	ENSMUSG00175021237	lncRNA gene	Chr10:16678272-16694327 (+)
C57BL/6NJ	ENSMUSG00215003767	lncRNA gene	Chr10:16472500-16488551 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015150	protein coding gene	Chr10:15720162-15737792 (+)
CAST/EiJ	ENSTCUG00005029940	lncRNA gene	Chr10:16440582-16463356 (+)
CBA/J	ENSMUSG00210015814	lncRNA gene	Chr10:16615908-16631959 (+)
DBA/2J	ENSMUSG00185007505	lncRNA gene	Chr10:16600428-16616481 (+)
FVB/NJ	ENSMUSG00205020020	lncRNA gene	Chr10:16513044-16529097 (+)
JF1/MsJ	ENSUMUG00000015690	lncRNA gene	Chr10:16661610-16683918 (+)
LP/J	ENSMUSG00230019326	lncRNA gene	Chr10:18256374-18272425 (+)
NOD/ShiLtJ	ENSMUSG00190011419	lncRNA gene	Chr10:16583744-16599797 (+)
NZO/HlLtJ	ENSMUSG00225031013	lncRNA gene	Chr10:22731281-22747332 (+)
PWK/PhJ	ENSLUMG00010015446	lncRNA gene	Chr10:16427221-16449991 (+)
SPRET/EiJ	ENSMSPG00010011326	lncRNA gene	Chr10:17038190-17054871 (+)
WSB/EiJ	ENSIUOG00005023766	lncRNA gene	Chr10:16223934-16240003 (+)

Homology

• Gene Tree
  9230106D20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9230106D20Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000042940 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000042940	Ensembl Gene Model | MGI Sequence Detail	16052	C57BL/6J
transcript	ENSMUST00000216922	Ensembl | MGI Sequence Detail	1407	Not Applicable
polypeptide	Q8CC72	UniProt | EBI | MGI Sequence Detail	171	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for 9230106D20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3149	Chr10:19520738-19520742 (+)	242 bp