Dcdc5 Pseudogene Detail

Summary

• Symbol
  Dcdc5
• Name
  doublecortin domain containing 5
• Synonyms
  4732421G10Rik, EG436559

• Feature Type
  pseudogene
• IDs
  MGI:3045363
  NCBI Gene: 329482
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:105868563-106234411 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.58 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  10105 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045363	pseudogene	Chr2:105833679-106236532 (+)
129S1/SvImJ	ENSMUSG00200008355	pseudogene	Chr2:102677450-103086321 (+)
A/J	ENSMUSG00195031107	pseudogene	Chr2:102822831-103236982 (+)
AKR/J	ENSMUSG00220005226	pseudogene	Chr2:102568215-102982339 (+)
BALB/cJ	ENSMUSG00180035018	pseudogene	Chr2:102618258-103032387 (+)
C3H/HeJ	ENSMUSG00175033826	pseudogene	Chr2:102922118-103351436 (+)
C57BL/6NJ	ENSMUSG00215030745	pseudogene	Chr2:102720732-103124365 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037013	pseudogene	Chr2:99470213-99872306 (+)
CAST/EiJ	ENSTCUG00005006141	pseudogene	Chr2:101965790-102379943 (+)
CBA/J	ENSMUSG00210040638	pseudogene	Chr2:102895897-103310029 (+)
DBA/2J	ENSMUSG00185041087	pseudogene	Chr2:102614841-103028925 (+)
FVB/NJ	ENSMUSG00205019650	pseudogene	Chr2:101956284-102359024 (+)
JF1/MsJ	ENSUMUG00000004543	pseudogene	Chr2:102331716-102761185 (+)
LP/J	ENSMUSG00230006518	pseudogene	Chr2:104364095-104778223 (+)
NOD/ShiLtJ	ENSMUSG00190016626	pseudogene	Chr2:102746494-103155291 (+)
NZO/HlLtJ	ENSMUSG00225012973	pseudogene	Chr2:112269201-112677987 (+)
PWK/PhJ	ENSLUMG00010024773	pseudogene	Chr2:102328468-102752989 (+)
SPRET/EiJ	ENSMSPG00010038189	pseudogene	Chr2:104394998-104841042 (+)
WSB/EiJ	ENSIUOG00005033743	pseudogene	Chr2:102409926-102818997 (+)

Homology

• Gene Tree
  Dcdc5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Dcdc5
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  26 strains or lines available

Expression

• Assay Results
  664
• Tissues
  16
• cDNA Data
  7
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000074981 (Evidence)
• NCBI Gene
  329482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074981	Ensembl Gene Model | MGI Sequence Detail	365849	C57BL/6J
transcript	ENSMUST00000122388	Ensembl | MGI Sequence Detail	5296	Not Applicable
polypeptide	A2BHQ5	UniProt | EBI | MGI Sequence Detail	186	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR056415 DCDC1, second doublecortin-like domain
  IPR043188 Doublecortin domain-containing protein 1
  IPR036572 Doublecortin domain superfamily

Molecular
Reagents

• All nucleic 9

  cDNA 7

  Other 2

  Antibodies 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3041252, MGI:3648853

References

• Summaries
  All 19

  Developmental Gene Expression 2

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Dcdc5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19274	Chr2:105911270-105911275 (+)	42,710 bp
Tssr19275	Chr2:105911338-105911349 (+)	42,781 bp
Tssr19276	Chr2:105911372-105911380 (+)	42,813 bp
Tssr19277	Chr2:106056794-106056803 (+)	188,236 bp
Tssr19278	Chr2:106135082-106135099 (+)	266,528 bp
Tssr19279	Chr2:106213055-106213056 (+)	344,493 bp