C130073F10Rik Gene Detail

Summary

• Symbol
  C130073F10Rik
• Name
  RIKEN cDNA C130073F10 gene

• Feature Type
  protein coding gene
• IDs
  MGI:3045359
  NCBI Gene: 242574
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:101747217-101750986 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 46.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045359	protein coding gene	Chr4:101747217-101760875 (-)
129S1/SvImJ	ENSMUSG00200027316	protein coding gene	Chr4:96735615-96739390 (-)
A/J	ENSMUSG00195008084	protein coding gene	Chr4:97276867-97280638 (-)
AKR/J	ENSMUSG00220005462	protein coding gene	Chr4:96716442-96720213 (-)
BALB/cJ	ENSMUSG00180030755	protein coding gene	Chr4:96202245-96206017 (-)
C3H/HeJ	ENSMUSG00175014165	protein coding gene	Chr4:97195938-97199709 (-)
C57BL/6NJ	ENSMUSG00215012405	protein coding gene	Chr4:97122822-97126596 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026209	protein coding gene	Chr4:93896621-93900179 (-)
CAST/EiJ	ENSTCUG00005006975	protein coding gene	Chr4:96369550-96373321 (-)
CBA/J	ENSMUSG00210026609	protein coding gene	Chr4:96738199-96741966 (-)
DBA/2J	ENSMUSG00185021692	protein coding gene	Chr4:97520172-97523940 (-)
FVB/NJ	ENSMUSG00205010959	protein coding gene	Chr4:95714414-95718187 (-)
JF1/MsJ	ENSUMUG00000020318	protein coding gene	Chr4:97588739-97592585 (-)
LP/J	ENSMUSG00230020565	protein coding gene	Chr4:100825052-100828823 (-)
NOD/ShiLtJ	ENSMUSG00190027260	protein coding gene	Chr4:96181907-96185678 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010018221	protein coding gene	Chr4:95278686-95282545 (-)
SPRET/EiJ	ENSMSPG00010008074	protein coding gene	Chr4:97518138-97521884 (-)
WSB/EiJ	ENSIUOG00005002582	protein coding gene	Chr4:96470342-96474111 (-)

Homology

• Gene Tree
  C130073F10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  5
• Genomic Mutations
  4 involving C130073F10Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  19 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  761
• Tissues
  45
• cDNA Data
  6
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS89784.1

• Ensembl
  ENSMUSG00000046133 (Evidence)
• NCBI Gene
  242574

Representative Sequences			Length	Strain/Species
genomic	242574	NCBI Gene Model | MGI Sequence Detail	3770	C57BL/6J
transcript	NM_001331179	RefSeq | MGI Sequence Detail	928	C57BL/6
polypeptide	NP_001318108	RefSeq | MGI Sequence Detail	201	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR050694 LRRC14/PRAME
  IPR060378 PRAME-like, N-terminal domain

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 4

References

• Summaries
  All 27

  Developmental Gene Expression 2

  Phenotypes 9
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42