6030452D12Rik Gene Detail

Summary

• Symbol
  6030452D12Rik
• Name
  RIKEN cDNA 6030452D12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045356
  NCBI Gene: 330837
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:107227137-107236288 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 53.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  342 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045356	lncRNA gene	Chr8:107227137-107236288 (+)
129S1/SvImJ	ENSMUSG00200014900	lncRNA gene	Chr8:101507059-101516185 (+)
A/J	ENSMUSG00195020916	lncRNA gene	Chr8:101829626-101838755 (+)
AKR/J	ENSMUSG00220015707	lncRNA gene	Chr8:101968616-101977742 (+)
BALB/cJ	ENSMUSG00180026893	lncRNA gene	Chr8:101835407-101844539 (+)
C3H/HeJ	ENSMUSG00175025327	lncRNA gene	Chr8:101892487-101901606 (+)
C57BL/6NJ	ENSMUSG00215036853	lncRNA gene	Chr8:101506432-101515559 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031519	protein coding gene	Chr8:97624081-97630811 (+)
CAST/EiJ	ENSTCUG00005034574	lncRNA gene	Chr8:101263094-101271896 (+)
CBA/J	ENSMUSG00210035759	lncRNA gene	Chr8:101819797-101828922 (+)
DBA/2J	ENSMUSG00185005806	lncRNA gene	Chr8:107928538-107937663 (+)
FVB/NJ	ENSMUSG00205018718	lncRNA gene	Chr8:100804151-100813281 (+)
JF1/MsJ	ENSUMUG00000015061	lncRNA gene	Chr8:110261707-110270837 (+)
LP/J	ENSMUSG00230036259	lncRNA gene	Chr8:111608909-111618032 (+)
NOD/ShiLtJ	ENSMUSG00190029367	lncRNA gene	Chr8:101954804-101963928 (+)
NZO/HlLtJ	ENSMUSG00225023037	lncRNA gene	Chr8:114959458-114968581 (+)
PWK/PhJ	ENSLUMG00010029861	lncRNA gene	Chr8:101747304-101755934 (+)
SPRET/EiJ	ENSMSPG00010041236	lncRNA gene	Chr8:103811753-103820256 (+)
WSB/EiJ	ENSIUOG00005032959	lncRNA gene	Chr8:102624786-102633445 (+)

Homology

• Gene Tree
  6030452D12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000054069 (Evidence)
• NCBI Gene
  330837

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054069	Ensembl Gene Model | MGI Sequence Detail	9152	C57BL/6J
transcript	ENSMUST00000066875	Ensembl | MGI Sequence Detail	3000	Not Applicable
polypeptide	Q8CD33	UniProt | EBI | MGI Sequence Detail	222	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 6030452D12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79249	Chr8:107230707-107230710 (+)	3,572 bp