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6820408C15Rik Gene Detail
Summary
  • Symbol
    6820408C15Rik
  • Name
    RIKEN cDNA 6820408C15 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045333
    NCBI Gene: 228778
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:152257507-152286250 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 74.99 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    723 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045333
 protein coding gene Chr2:152257507-152286256 (+)
129S1/SvImJ ENSMUSG00200028565
 protein coding gene Chr2:149157652-149186340 (+)
A/J ENSMUSG00195017165
 protein coding gene Chr2:149453266-149469859 (+)
AKR/J ENSMUSG00220045089
 protein coding gene Chr2:148778047-148794914 (+)
BALB/cJ ENSMUSG00180038867
 protein coding gene Chr2:148939532-148956371 (+)
C3H/HeJ ENSMUSG00175040000
 protein coding gene Chr2:149685758-149702599 (+)
C57BL/6NJ ENSMUSG00215018539
 protein coding gene Chr2:149112728-149129589 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024455
 protein coding gene Chr2:144290756-144319292 (+)
CAST/EiJ ENSTCUG00005038883
 protein coding gene Chr2:148036421-148053895 (+)
CBA/J ENSMUSG00210043963
 protein coding gene Chr2:149622249-149639086 (+)
DBA/2J ENSMUSG00185045660
 protein coding gene Chr2:149272749-149289610 (+)
FVB/NJ ENSMUSG00205022971
 protein coding gene Chr2:148369495-148386356 (+)
JF1/MsJ ENSUMUG00000045339
 protein coding gene Chr2:148942118-148958720 (+)
LP/J ENSMUSG00230032344
 protein coding gene Chr2:150921921-150938750 (+)
NOD/ShiLtJ ENSMUSG00190032785
 protein coding gene Chr2:149041469-149058064 (+)
NZO/HlLtJ ENSMUSG00225004423
 protein coding gene Chr2:158949014-158977759 (+)
PWK/PhJ ENSLUMG00010037856
 protein coding gene Chr2:148911233-148927768 (+)
SPRET/EiJ ENSMSPG00010027919
 protein coding gene Chr2:151635952-151652692 (+)
WSB/EiJ ENSIUOG00005046706
 protein coding gene Chr2:148777074-148793909 (+)



Homology
more
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
  • Synonyms
    dJ1103G7.2
  • Links
    NCBI Gene ID: 140680
    UniProt: Q9NUD7

  • Chr Location
    20p13; chr20:270863-290778 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000032680 Ensembl Gene Model | MGI Sequence Detail 28744 C57BL/6J ±  kb
    transcript ENSMUST00000039961 Ensembl | MGI Sequence Detail 1684 Not Applicable  
    polypeptide ENSMUSP00000037024 Ensembl | MGI Sequence Detail 354 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • InterPro Domains
      IPR029236 Protein of unknown function DUF4618
    Molecular
    Reagents
    less
    • All nucleic 8
      cDNA 8

      Microarray probesets 4
    References
    more
    • Summaries
      All 29
      Phenotypes 11
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/15/2026
    MGI 6.29     		The Jackson Laboratory