A930007A09Rik Gene Detail

Summary

• Symbol
  A930007A09Rik
• Name
  RIKEN cDNA A930007A09 gene

• Feature Type
  protein coding gene
• IDs
  MGI:3045309
  NCBI Gene: 432999
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:13572430-13576401 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 9.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045309	protein coding gene	Chr16:13572428-13576401 (+)
129S1/SvImJ	ENSMUSG00200041741	protein coding gene	Chr16:10554748-10557925 (+)
A/J	ENSMUSG00195032727	protein coding gene	Chr16:10119803-10122980 (+)
AKR/J	ENSMUSG00220043881	protein coding gene	Chr16:10416701-10419878 (+)
BALB/cJ	ENSMUSG00180037189	protein coding gene	Chr16:10361187-10364372 (+)
C3H/HeJ	ENSMUSG00175043047	protein coding gene	Chr16:10520900-10524091 (+)
C57BL/6NJ	ENSMUSG00215031680	protein coding gene	Chr16:10236970-10240148 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045223	protein coding gene	Chr16:10417769-10419921 (+)
CBA/J	ENSMUSG00210036005	protein coding gene	Chr16:10537893-10541083 (+)
DBA/2J	ENSMUSG00185031351	protein coding gene	Chr16:10483411-10486601 (+)
FVB/NJ	ENSMUSG00205027948	protein coding gene	Chr16:10476791-10479969 (+)
JF1/MsJ	ENSUMUG00000043108	protein coding gene	Chr16:10593885-10596039 (+)
LP/J	ENSMUSG00230044642	protein coding gene	Chr16:13050290-13053467 (+)
NOD/ShiLtJ	ENSMUSG00190039501	protein coding gene	Chr16:10611694-10614871 (+)
NZO/HlLtJ	ENSMUSG00225032012	protein coding gene	Chr16:16295605-16298782 (+)
PWK/PhJ	ENSLUMG00010044679	protein coding gene	Chr16:10459640-10461794 (+)
SPRET/EiJ	ENSMSPG00010042630	protein coding gene	Chr16:10431292-10433589 (+)
WSB/EiJ	ENSIUOG00005034117	protein coding gene	Chr16:10557113-10560299 (+)

Homology

• Gene Tree
  A930007A09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000118559 (Evidence)
• NCBI Gene
  432999

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118559	Ensembl Gene Model | MGI Sequence Detail	3972	C57BL/6J
transcript	ENSMUST00000239037	Ensembl | MGI Sequence Detail	3972	Not Applicable
polypeptide	ENSMUSP00000159217	Ensembl | MGI Sequence Detail	636	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR029365 TMEM238 protein

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 2
• Earliest
  J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

TSS for A930007A09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137153	Chr16:13572418-13572492 (+)	25 bp
Tssr137154	Chr16:13575900-13575903 (+)	3,472 bp