A230083G16Rik Gene Detail

Summary

• Symbol
  A230083G16Rik
• Name
  RIKEN cDNA A230083G16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045289
  NCBI Gene: 442825
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:124893826-124902807 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 59.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045289	lncRNA gene	Chr6:124891488-124907066 (+)
129S1/SvImJ	ENSMUSG00200052234	lncRNA gene	Chr6:121955194-121964176 (+)
129S1/SvImJ	ENSMUSG00200050746	protein coding gene	Chr6:121951949-121968141 (+)
A/J	ENSMUSG00195048349	lncRNA gene	Chr6:121408337-121417312 (+)
AKR/J	ENSMUSG00220034226	lncRNA gene	Chr6:120269926-120278906 (+)
BALB/cJ	ENSMUSG00180050580	lncRNA gene	Chr6:121746985-121755962 (+)
C3H/HeJ	ENSMUSG00175049967	lncRNA gene	Chr6:121417100-121417772 (+)
C57BL/6NJ	ENSMUSG00215048545	lncRNA gene	Chr6:121718927-121727906 (+)
C57BL/6NJ	ENSMUSG00215044811	protein coding gene	Chr6:121715682-121731869 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003931	antisense lncRNA gene	Chr6:120614589-120622538 (+)
CAST/EiJ	ENSTCUG00005050640	lncRNA gene	Chr6:121592387-121601340 (+)
CBA/J	ENSMUSG00210047210	lncRNA gene	Chr6:121447418-121456393 (+)
DBA/2J	ENSMUSG00185039655	protein coding gene	Chr6:122143775-122159967 (+)
DBA/2J	ENSMUSG00185043406	lncRNA gene	Chr6:122147021-122155998 (+)
FVB/NJ	ENSMUSG00205052058	lncRNA gene	Chr6:120861777-120870757 (+)
FVB/NJ	ENSMUSG00205026606	protein coding gene	Chr6:120858529-120874728 (+)
JF1/MsJ	ENSUMUG00000053758	lncRNA gene	Chr6:120556674-120565640 (+)
LP/J	ENSMUSG00230042131	protein coding gene	Chr6:123340672-123356858 (+)
LP/J	ENSMUSG00230044039	lncRNA gene	Chr6:123343919-123352889 (+)
NOD/ShiLtJ	ENSMUSG00190051639	lncRNA gene	Chr6:121118620-121127594 (+)
NZO/HlLtJ	ENSMUSG00225017995	lncRNA gene	Chr6:125366830-125375808 (+)
NZO/HlLtJ	ENSMUSG00225015763	protein coding gene	Chr6:125363583-125379771 (+)
PWK/PhJ	ENSLUMG00010050361	lncRNA gene	Chr6:119823554-119832691 (+)
SPRET/EiJ	ENSMSPG00010040984	lncRNA gene	Chr6:122674224-122682989 (+)
WSB/EiJ	ENSIUOG00005044703	lncRNA gene	Chr6:121832051-121841025 (+)

Homology

• Gene Tree
  A230083G16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  32
• Gene trapped
  31
• Targeted
  1
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055818 (Evidence)
• NCBI Gene
  442825

Representative Sequences			Length	Strain/Species
genomic	442825	NCBI Gene Model | MGI Sequence Detail	8982	C57BL/6J
transcript	NR_152158	RefSeq | MGI Sequence Detail	991	C57BL/6
polypeptide	Q8CAE1	UniProt | EBI | MGI Sequence Detail	153	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for A230083G16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58864	Chr6:124891867-124891891 (+)	-1,947 bp