BC028471 Gene Detail

Summary

• Symbol
  BC028471
• Name
  cDNA sequence BC028471

• Feature Type
  lncRNA gene
• IDs
  MGI:3041249
  NCBI Gene: 105242581
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:149291032-149330769 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 89.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1294 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041249	lncRNA gene	Chr5:149286336-149330769 (+)
129S1/SvImJ	ENSMUSG00200011611	lncRNA gene	Chr5:143126468-143152431 (+)
A/J	ENSMUSG00195005030	lncRNA gene	Chr5:142741420-142767379 (+)
AKR/J	ENSMUSG00220015632	lncRNA gene	Chr5:141739622-141765732 (+)
BALB/cJ	ENSMUSG00180003145	lncRNA gene	Chr5:143143807-143169769 (+)
C3H/HeJ	ENSMUSG00175012562	lncRNA gene	Chr5:144984617-145010582 (+)
C57BL/6NJ	ENSMUSG00215000145	lncRNA gene	Chr5:142682200-142708161 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006263	lincRNA gene	Chr5:142915690-142942471 (+)
CAST/EiJ	ENSTCUG00005010281	lncRNA gene	Chr5:142263669-142289528 (+)
CBA/J	ENSMUSG00210001136	lncRNA gene	Chr5:143872373-143898328 (+)
DBA/2J	ENSMUSG00185041316	lncRNA gene	Chr5:146842494-146868458 (+)
FVB/NJ	ENSMUSG00205046029	lncRNA gene	Chr5:142522688-142548646 (+)
JF1/MsJ	ENSUMUG00000050764	lncRNA gene	Chr5:149337778-149363384 (+)
LP/J	ENSMUSG00230029733	lncRNA gene	Chr5:150843143-150869107 (+)
NOD/ShiLtJ	ENSMUSG00190006057	lncRNA gene	Chr5:142483734-142516982 (+)
NZO/HlLtJ	ENSMUSG00225009140	lncRNA gene	Chr5:158588297-158614261 (+)
PWK/PhJ	ENSLUMG00010000461	lncRNA gene	Chr5:141603710-141629432 (+)
SPRET/EiJ	ENSMSPG00010006497	lncRNA gene	Chr5:144378797-144404275 (+)
WSB/EiJ	ENSIUOG00005014487	lncRNA gene	Chr5:145265472-145291566 (+)

Homology

• Gene Tree
  BC028471
  

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  99
• RefSeq
  7
• UniProt
  1

• Ensembl
  ENSMUSG00000107271 (Evidence)
• NCBI Gene
  105242581

Representative Sequences			Length	Strain/Species
genomic	105242581	NCBI Gene Model | MGI Sequence Detail	39738	C57BL/6J
transcript	AK138849	GenBank | ENA | DDBJ | MGI Sequence Detail	4117	C57BL/6J
polypeptide	Q3UU29	UniProt | EBI | MGI Sequence Detail	62	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 9
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for BC028471:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49897	Chr5:149291016-149291048 (+)	0 bp
Tssr49898	Chr5:149291055-149291072 (+)	32 bp