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AY512915 Gene Detail
Summary
  • Symbol
    AY512915
  • Name
    cDNA sequence AY512915
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3041245
    NCBI Gene: 414067
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:95267555-95310974 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 44.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    503 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3041245
 lncRNA gene Chr6:95232707-95310974 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015643
 unclassified non-coding RNA gene Chr6:97045273-97121676 (-)
A/J MGP_AJ_G0015619
 unclassified non-coding RNA gene Chr6:93364797-93446266 (-)
AKR/J MGP_AKRJ_G0015582
 unclassified non-coding RNA gene Chr6:95929803-96008799 (-)
BALB/cJ MGP_BALBcJ_G0015581
 unclassified non-coding RNA gene Chr6:93314922-93399222 (-)
C3H/HeJ MGP_C3HHeJ_G0015399
 unclassified non-coding RNA gene Chr6:88406338-88489122 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016034
 unclassified non-coding RNA gene Chr6:99471647-99549691 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013767
 unclassified non-coding RNA gene Chr6:91303014-91381559 (-)
CAST/EiJ MGP_CASTEiJ_G0014959
 unclassified non-coding RNA gene Chr6:96139856-96225413 (-)
CBA/J MGP_CBAJ_G0015384
 unclassified non-coding RNA gene Chr6:103285626-103365507 (-)
DBA/2J MGP_DBA2J_G0015478
 unclassified non-coding RNA gene Chr6:92510675-92591691 (-)
FVB/NJ MGP_FVBNJ_G0015485
 unclassified non-coding RNA gene Chr6:91721432-91797323 (-)
LP/J MGP_LPJ_G0015559
 unclassified non-coding RNA gene Chr6:97048477-97126542 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015508
 unclassified non-coding RNA gene Chr6:107210360-107294872 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016076
 unclassified non-coding RNA gene Chr6:95804248-95880887 (-)
PWK/PhJ MGP_PWKPhJ_G0014742
 unclassified non-coding RNA gene Chr6:91525567-91610608 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014530
 unclassified non-coding RNA gene Chr6:94739737-94816772 (-)
WSB/EiJ MGP_WSBEiJ_G0015063
 unclassified non-coding RNA gene Chr6:96270522-96349895 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 414067 NCBI Gene Model | MGI Sequence Detail 43420 C57BL/6J ±  kb
transcript NR_033559 RefSeq | MGI Sequence Detail 3653 C57BL/6  
polypeptide Q6R5G7 UniProt | EBI | MGI Sequence Detail 70 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Phenotypes 4
  • Earliest
    J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory