D330050I16Rik Gene Detail

Summary

• Symbol
  D330050I16Rik
• Name
  RIKEN cDNA D330050I16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041222
  NCBI Gene: 414115
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:5438364-5439630 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041222	lncRNA gene	Chr19:5438364-5440097 (+)
129S1/SvImJ	ENSMUSG00200052438	lncRNA gene	Chr19:2200279-2201544 (+)
A/J	ENSMUSG00195054058	lncRNA gene	Chr19:2596383-2597648 (+)
AKR/J	ENSMUSG00220050557	lncRNA gene	Chr19:2369497-2370762 (+)
BALB/cJ	ENSMUSG00180052485	lncRNA gene	Chr19:2971107-2972372 (+)
C3H/HeJ	ENSMUSG00175014743	lncRNA gene	Chr19:2221314-2222579 (+)
C57BL/6NJ	ENSMUSG00215047114	lncRNA gene	Chr19:2438476-2439741 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043340	lncRNA gene	Chr19:2361617-2362882 (+)
CBA/J	ENSMUSG00210050192	lncRNA gene	Chr19:2221863-2223128 (+)
DBA/2J	ENSMUSG00185052796	lncRNA gene	Chr19:2598319-2599584 (+)
FVB/NJ	ENSMUSG00205053300	lncRNA gene	Chr19:2602040-2603305 (+)
JF1/MsJ	ENSUMUG00000056354	lncRNA gene	Chr19:2577499-2578750 (+)
LP/J	ENSMUSG00230054299	lncRNA gene	Chr19:3507199-3508464 (+)
NOD/ShiLtJ	ENSMUSG00190053351	lncRNA gene	Chr19:2130897-2132162 (+)
NZO/HlLtJ	ENSMUSG00225026821	lncRNA gene	Chr19:7215967-7217232 (+)
PWK/PhJ	ENSLUMG00010008756	lncRNA gene	Chr19:2346453-2347704 (+)
SPRET/EiJ	ENSMSPG00010050812	lncRNA gene	Chr19:2333513-2334822 (+)
WSB/EiJ	ENSIUOG00005050757	lncRNA gene	Chr19:2233875-2235140 (+)

Homology

• Gene Tree
  D330050I16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000117959 (Evidence)
• NCBI Gene
  414115

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117959	Ensembl Gene Model | MGI Sequence Detail	1267	C57BL/6J
transcript	ENSMUST00000237256	Ensembl | MGI Sequence Detail	1267	Not Applicable
polypeptide	Q9CUU9	UniProt | EBI | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for D330050I16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154409	Chr19:5438842-5438859 (+)	487 bp
Tssr154410	Chr19:5438866-5438913 (+)	526 bp