9230114K14Rik Gene Detail

Summary

• Symbol
  9230114K14Rik
• Name
  RIKEN cDNA 9230114K14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041212
  NCBI Gene: 414108
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:52348023-52355326 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 27.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  311 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041212	lncRNA gene	Chr5:52347984-52496385 (+)
129S1/SvImJ	ENSMUSG00200001349	lncRNA gene	Chr5:47895943-47984105 (+)
A/J	ENSMUSG00195016462	lncRNA gene	Chr5:47258350-47346740 (+)
AKR/J	ENSMUSG00220000911	lncRNA gene	Chr5:47328018-47416417 (+)
BALB/cJ	ENSMUSG00180007022	lncRNA gene	Chr5:47025412-47113648 (+)
C3H/HeJ	ENSMUSG00175016314	lncRNA gene	Chr5:49048240-49136625 (+)
C57BL/6NJ	ENSMUSG00215001843	lncRNA gene	Chr5:47822648-47911030 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013725	unclassified non-coding RNA gene	Chr5:46145039-46235386 (+)
CAST/EiJ	ENSTCUG00005003195	lncRNA gene	Chr5:47181694-47269856 (+)
CBA/J	ENSMUSG00210024666	lncRNA gene	Chr5:48008627-48097009 (+)
DBA/2J	ENSMUSG00185001853	lncRNA gene	Chr5:49887082-49975475 (+)
FVB/NJ	ENSMUSG00205003016	lncRNA gene	Chr5:46837919-46926305 (+)
JF1/MsJ	ENSUMUG00000000980	lncRNA gene	Chr5:54454403-54542400 (+)
LP/J	ENSMUSG00230010901	lncRNA gene	Chr5:54559651-54647793 (+)
NOD/ShiLtJ	ENSMUSG00190000864	lncRNA gene	Chr5:46954154-47042542 (+)
NZO/HlLtJ	ENSMUSG00225028735	lncRNA gene	Chr5:59666825-59755203 (+)
PWK/PhJ	ENSLUMG00010001577	lncRNA gene	Chr5:47125296-47213297 (+)
SPRET/EiJ	ENSMSPG00010013615	lncRNA gene	Chr5:48616927-48706955 (+)
WSB/EiJ	ENSIUOG00005019776	lncRNA gene	Chr5:49929753-50017938 (+)

Homology

• Gene Tree
  9230114K14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  4
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 9230114K14Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  1

• Ensembl
  ENSMUSG00000097145 (Evidence)
• NCBI Gene
  414108

Representative Sequences			Length	Strain/Species
genomic	414108	NCBI Gene Model | MGI Sequence Detail	7304	C57BL/6J
transcript	NR_015537	RefSeq | MGI Sequence Detail	2118	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 1

References

• Summaries
  All 31

  Phenotypes 20
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 9230114K14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46165	Chr5:52347202-52347213 (+)	-815 bp
Tssr46166	Chr5:52347992-52348046 (+)	-4 bp
Tssr46167	Chr5:52348061-52348070 (+)	43 bp