4732465J04Rik Gene Detail

Summary

• Symbol
  4732465J04Rik
• Name
  RIKEN cDNA 4732465J04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041208
  NCBI Gene: 414105
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:95608995-95630846 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 49.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  730 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041208	lncRNA gene	Chr10:95581920-95733748 (+)
129S1/SvImJ	ENSMUSG00200020252	lncRNA gene	Chr10:92097500-92148674 (+)
A/J	ENSMUSG00195015499	lncRNA gene	Chr10:92523661-92574845 (+)
AKR/J	ENSMUSG00220025844	lncRNA gene	Chr10:92085388-92136564 (+)
BALB/cJ	ENSMUSG00180010299	lncRNA gene	Chr10:92531779-92582963 (+)
C3H/HeJ	ENSMUSG00175005942	lncRNA gene	Chr10:92430781-92481962 (+)
C57BL/6NJ	ENSMUSG00215007862	lncRNA gene	Chr10:92113237-92164408 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004669	lincRNA gene	Chr10:89451009-89500661 (+)
CAST/EiJ	ENSTCUG00005005729	lncRNA gene	Chr10:91804769-91856450 (+)
CBA/J	ENSMUSG00210023130	lncRNA gene	Chr10:92261904-92313075 (+)
DBA/2J	ENSMUSG00185019483	lncRNA gene	Chr10:92473879-92525054 (+)
FVB/NJ	ENSMUSG00205003911	lncRNA gene	Chr10:92179531-92230722 (+)
JF1/MsJ	ENSUMUG00000033366	lncRNA gene	Chr10:93911430-93962950 (+)
LP/J	ENSMUSG00230022500	lncRNA gene	Chr10:94386132-94437307 (+)
NOD/ShiLtJ	ENSMUSG00190026549	lncRNA gene	Chr10:92511099-92562260 (+)
NZO/HlLtJ	ENSMUSG00225022217	lncRNA gene	Chr10:98629676-98680843 (+)
PWK/PhJ	ENSLUMG00010005760	lncRNA gene	Chr10:92158604-92210127 (+)
SPRET/EiJ	ENSMSPG00010010311	lncRNA gene	Chr10:93808793-93865879 (+)
WSB/EiJ	ENSIUOG00005013159	lncRNA gene	Chr10:92215152-92266317 (+)

Homology

• Gene Tree
  4732465J04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving 4732465J04Rik
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  189
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000101517 (Evidence)
• NCBI Gene
  414105

Representative Sequences			Length	Strain/Species
genomic	414105	NCBI Gene Model | MGI Sequence Detail	21852	C57BL/6J
transcript	AK165804	GenBank | ENA | DDBJ | MGI Sequence Detail	2754	C57BL/6J
polypeptide	Q8C686	UniProt | EBI | MGI Sequence Detail	146	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 9

  cDNA 8

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Developmental Gene Expression 1

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for 4732465J04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95377	Chr10:95609692-95609697 (+)	700 bp
Tssr95378	Chr10:95614763-95614789 (+)	5,781 bp
Tssr95379	Chr10:95614810-95614817 (+)	5,819 bp
Tssr95380	Chr10:95615842-95615853 (+)	6,853 bp
Tssr95381	Chr10:95618514-95618544 (+)	9,534 bp