E230032D23Rik Gene Detail

Summary

• Symbol
  E230032D23Rik
• Name
  RIKEN cDNA E230032D23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041205
  NCBI Gene: 414103
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:143181792-143224351 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1052 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041205	lncRNA gene	Chr7:143181759-143224351 (+)
129S1/SvImJ	ENSMUSG00200047918	lncRNA gene	Chr7:129748368-129790955 (+)
A/J	ENSMUSG00195001810	lncRNA gene	Chr7:134230532-134273126 (+)
AKR/J	ENSMUSG00220037324	lncRNA gene	Chr7:127712728-127755321 (+)
BALB/cJ	ENSMUSG00180042192	lncRNA gene	Chr7:130918379-130960964 (+)
C3H/HeJ	ENSMUSG00175004051	lncRNA gene	Chr7:131651376-131693961 (+)
C57BL/6NJ	ENSMUSG00215048032	lncRNA gene	Chr7:130917754-130960346 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002940	lncRNA gene	Chr7:134215948-134291411 (+)
CBA/J	ENSMUSG00210003794	lncRNA gene	Chr7:131409276-131451856 (+)
DBA/2J	ENSMUSG00185018856	lncRNA gene	Chr7:135687905-135730499 (+)
FVB/NJ	ENSMUSG00205002156	lncRNA gene	Chr7:131329990-131372588 (+)
JF1/MsJ	ENSUMUG00000048327	lncRNA gene	Chr7:140762064-140774839 (+)
LP/J	ENSMUSG00230007872	lncRNA gene	Chr7:141851140-141893724 (+)
NOD/ShiLtJ	ENSMUSG00190003954	lncRNA gene	Chr7:131516759-131559339 (+)
NZO/HlLtJ	ENSMUSG00225053206	lncRNA gene	Chr7:140060079-140102663 (+)
PWK/PhJ	ENSLUMG00010049168	lncRNA gene	Chr7:129899538-129940567 (+)
SPRET/EiJ	ENSMSPG00010045909	lncRNA gene	Chr7:131353880-131436875 (+)
WSB/EiJ	ENSIUOG00005000936	lncRNA gene	Chr7:132280386-132323657 (+)

Homology

• Gene Tree
  E230032D23Rik
  

Expression

• Assay Results
  612
• Tissues
  7
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000109251 (Evidence)
• NCBI Gene
  414103

Representative Sequences			Length	Strain/Species
genomic	414103	NCBI Gene Model | MGI Sequence Detail	42560	C57BL/6J
transcript	NR_153818	RefSeq | MGI Sequence Detail	1074	ZRU/MplStud

Molecular
Reagents

• All nucleic 9

  cDNA 4

  Primer pair 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5433117

References

• Summaries
  All 11

  Developmental Gene Expression 1
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:186763 Esperon Ede L, et al., A genomic reservoir for Tnfrsf genes is developmentally regulated and imprinted in the mouse. Epigenetics. 2012 Jun 1;7(6):626-34

TSS for E230032D23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70301	Chr7:143180112-143180125 (+)	-1,673 bp
Tssr70302	Chr7:143181785-143181800 (+)	1 bp
Tssr70303	Chr7:143181806-143181858 (+)	40 bp
Tssr70304	Chr7:143181957-143181967 (+)	170 bp
Tssr70305	Chr7:143181976-143182023 (+)	208 bp