E230016K23Rik Gene Detail

Summary

• Symbol
  E230016K23Rik
• Name
  RIKEN cDNA E230016K23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041204
  NCBI Gene: 100504464
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:83472887-83514519 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1389 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041204	lncRNA gene	Chr11:83472882-83522277 (+)
129S1/SvImJ	ENSMUSG00200051902	lncRNA gene	Chr11:80600845-80642527 (+)
A/J	ENSMUSG00195047081	lncRNA gene	Chr11:80455295-80496976 (+)
AKR/J	ENSMUSG00220048509	lncRNA gene	Chr11:80670576-80712437 (+)
BALB/cJ	ENSMUSG00180042742	lncRNA gene	Chr11:80662604-80704249 (+)
C3H/HeJ	ENSMUSG00175040990	lncRNA gene	Chr11:80602329-80644012 (+)
C57BL/6NJ	ENSMUSG00215042424	lncRNA gene	Chr11:80246255-80287896 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013327	unclassified non-coding RNA gene	Chr11:78813259-78853640 (+)
CAST/EiJ	ENSTCUG00005046161	lncRNA gene	Chr11:80119963-80161570 (+)
CBA/J	ENSMUSG00210048241	lncRNA gene	Chr11:80419936-80461622 (+)
DBA/2J	ENSMUSG00185040587	lncRNA gene	Chr11:80755270-80797128 (+)
FVB/NJ	ENSMUSG00205047542	lncRNA gene	Chr11:80550168-80591811 (+)
JF1/MsJ	ENSUMUG00000028282	lncRNA gene	Chr11:81063118-81104574 (+)
LP/J	ENSMUSG00230029818	lncRNA gene	Chr11:81770085-81811765 (+)
NOD/ShiLtJ	ENSMUSG00190047156	lncRNA gene	Chr11:80762505-80804144 (+)
NZO/HlLtJ	ENSMUSG00225040013	lncRNA gene	Chr11:83896596-83938228 (+)
PWK/PhJ	ENSLUMG00010025493	lncRNA gene	Chr11:80578907-80620651 (+)
SPRET/EiJ	ENSMSPG00010043945	lncRNA gene	Chr11:80974785-81014031 (+)
WSB/EiJ	ENSIUOG00005037231	lncRNA gene	Chr11:80571275-80613036 (+)

Homology

• Gene Tree
  E230016K23Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  1
• Targeted
  1
• Transgenic
  4
• Genomic Mutations
  3 involving E230016K23Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000051832 (Evidence)
• NCBI Gene
  100504464

Representative Sequences			Length	Strain/Species
genomic	100504464	NCBI Gene Model | MGI Sequence Detail	41633	C57BL/6J
transcript	NR_036452	RefSeq | MGI Sequence Detail	2221	C57BL/6
polypeptide	Q8C6Q1	UniProt | EBI | MGI Sequence Detail	169	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 32

  Diseases 1

  Phenotypes 17
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:358278 Yang Y, et al., Erythrocytic alpha-Synuclein and the Gut Microbiome: Kindling of the Gut-Brain Axis in Parkinson's Disease. Mov Disord. 2024 Jan;39(1):40-52

TSS for E230016K23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103717	Chr11:83472899-83472916 (+)	21 bp
Tssr103718	Chr11:83479213-83479228 (+)	6,334 bp
Tssr3610	Chr11:83494528-83494558 (+)	21,656 bp
Tssr3612	Chr11:83495792-83495802 (+)	22,910 bp