D730002M21Rik Gene Detail

Summary

• Symbol
  D730002M21Rik
• Name
  RIKEN cDNA D730002M21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041200
  NCBI Gene: 269094
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:56023528-56029373 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 51.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041200	lncRNA gene	Chr19:56023528-56029373 (+)
129S1/SvImJ	ENSMUSG00200015161	lncRNA gene	Chr19:52725037-52730882 (+)
A/J	ENSMUSG00195002575	lncRNA gene	Chr19:52900344-52906193 (+)
AKR/J	ENSMUSG00220017995	lncRNA gene	Chr19:52651550-52657409 (+)
BALB/cJ	ENSMUSG00180020147	lncRNA gene	Chr19:53139446-53145297 (+)
C3H/HeJ	ENSMUSG00175022670	lncRNA gene	Chr19:52675223-52681077 (+)
C57BL/6NJ	ENSMUSG00215026245	lncRNA gene	Chr19:52759503-52765352 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015819	lncRNA gene	Chr19:52304110-52309846 (+)
CBA/J	ENSMUSG00210021346	lncRNA gene	Chr19:52754588-52760440 (+)
DBA/2J	ENSMUSG00185028775	lncRNA gene	Chr19:53253348-53259206 (+)
FVB/NJ	ENSMUSG00205003674	lncRNA gene	Chr19:52135165-52141032 (+)
JF1/MsJ	ENSUMUG00000041341	lncRNA gene	Chr19:53430772-53436809 (+)
LP/J	ENSMUSG00230027795	lncRNA gene	Chr19:54006526-54012371 (+)
NOD/ShiLtJ	ENSMUSG00190013649	lncRNA gene	Chr19:52627458-52633321 (+)
NZO/HlLtJ	ENSMUSG00225025404	lncRNA gene	Chr19:57612211-57618068 (+)
PWK/PhJ	ENSLUMG00010019022	lncRNA gene	Chr19:52488338-52494178 (+)
SPRET/EiJ	ENSMSPG00010003565	lncRNA gene	Chr19:52351018-52356345 (+)
WSB/EiJ	ENSIUOG00005026007	lncRNA gene	Chr19:52112880-52118746 (+)

Homology

• Gene Tree
  D730002M21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000117827 (Evidence)
• NCBI Gene
  269094

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117827	Ensembl Gene Model | MGI Sequence Detail	5846	C57BL/6J
transcript	ENSMUST00000236136	Ensembl | MGI Sequence Detail	2691	Not Applicable
polypeptide	Q3TP38	UniProt | EBI | MGI Sequence Detail	92	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 10
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D730002M21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157172	Chr19:56023526-56023529 (+)	0 bp