C130060C02Rik Gene Detail

Summary

• Symbol
  C130060C02Rik
• Name
  RIKEN cDNA C130060C02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041192
  NCBI Gene: 100502653
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:15962439-15988276 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 10.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1213 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041192	lncRNA gene	Chr19:15962402-15993572 (+)
129S1/SvImJ	ENSMUSG00200020881	lncRNA gene	Chr19:12657731-12683344 (+)
A/J	ENSMUSG00195019046	lncRNA gene	Chr19:12794348-12819977 (+)
AKR/J	ENSMUSG00220010980	lncRNA gene	Chr19:12773402-12799049 (+)
BALB/cJ	ENSMUSG00180018672	lncRNA gene	Chr19:13162185-13187993 (+)
C3H/HeJ	ENSMUSG00175003842	lncRNA gene	Chr19:12504570-12530200 (+)
C57BL/6NJ	ENSMUSG00215024987	lncRNA gene	Chr19:12567652-12593275 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005287	lincRNA gene	Chr19:13359268-13386273 (+)
CAST/EiJ	ENSTCUG00005009042	lncRNA gene	Chr19:12409648-12435485 (+)
CBA/J	ENSMUSG00210012866	lncRNA gene	Chr19:12703011-12728642 (+)
DBA/2J	ENSMUSG00185013916	lncRNA gene	Chr19:13112400-13138031 (+)
FVB/NJ	ENSMUSG00205004007	lncRNA gene	Chr19:12566390-12592034 (+)
JF1/MsJ	ENSUMUG00000035242	lncRNA gene	Chr19:13361802-13387652 (+)
LP/J	ENSMUSG00230021851	lncRNA gene	Chr19:14025921-14051529 (+)
NOD/ShiLtJ	ENSMUSG00190021336	lncRNA gene	Chr19:12518311-12544100 (+)
NZO/HlLtJ	ENSMUSG00225047025	lncRNA gene	Chr19:17733332-17758978 (+)
PWK/PhJ	ENSLUMG00010008682	lncRNA gene	Chr19:12687424-12713003 (+)
SPRET/EiJ	ENSMSPG00010020009	lncRNA gene	Chr19:12647132-12679400 (+)
WSB/EiJ	ENSIUOG00005007176	lncRNA gene	Chr19:12235187-12260789 (+)

Homology

• Gene Tree
  C130060C02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000097557 (Evidence)
• NCBI Gene
  100502653

Representative Sequences			Length	Strain/Species
genomic	100502653	NCBI Gene Model | MGI Sequence Detail	25838	C57BL/6J
transcript	NR_045355	RefSeq | MGI Sequence Detail	1157	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for C130060C02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155377	Chr19:15962415-15962469 (+)	3 bp