C130026L21Rik Gene Detail

Summary

• Symbol
  C130026L21Rik
• Name
  RIKEN cDNA C130026L21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041189
  NCBI Gene: 330164
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:111729427-111735019 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 54.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041189	lncRNA gene	Chr5:111728807-111753483 (+)
129S1/SvImJ	ENSMUSG00200020620	protein coding gene	Chr5:105484424-105490696 (+)
129S1/SvImJ	ENSMUSG00200024843	lncRNA gene	Chr5:105484491-105508042 (+)
A/J	ENSMUSG00195042651	lncRNA gene	Chr5:104978869-105002157 (+)
A/J	ENSMUSG00195035472	protein coding gene	Chr5:104978802-104985064 (+)
AKR/J	ENSMUSG00220051950	lncRNA gene	Chr5:104500623-104526017 (+)
AKR/J	ENSMUSG00220049770	protein coding gene	Chr5:104500556-104506827 (+)
BALB/cJ	ENSMUSG00180038526	protein coding gene	Chr5:105125249-105131503 (+)
BALB/cJ	ENSMUSG00180046560	lncRNA gene	Chr5:105125316-105148778 (+)
C3H/HeJ	ENSMUSG00175046952	lncRNA gene	Chr5:107111898-107135392 (+)
C3H/HeJ	ENSMUSG00175036567	protein coding gene	Chr5:107111831-107118083 (+)
C57BL/6NJ	ENSMUSG00215027989	protein coding gene	Chr5:105126892-105133163 (+)
C57BL/6NJ	ENSMUSG00215039142	lncRNA gene	Chr5:105126959-105150467 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006142	lincRNA gene	Chr5:104509474-104532897 (+)
CAST/EiJ	ENSTCUG00005032267	lncRNA gene	Chr5:104307562-104331017 (+)
CBA/J	ENSMUSG00210046894	lncRNA gene	Chr5:105864000-105887482 (+)
CBA/J	ENSMUSG00210042595	protein coding gene	Chr5:105863933-105870185 (+)
DBA/2J	ENSMUSG00185049125	lncRNA gene	Chr5:108889937-108915328 (+)
DBA/2J	ENSMUSG00185044655	protein coding gene	Chr5:108889870-108896141 (+)
FVB/NJ	ENSMUSG00205052386	lncRNA gene	Chr5:104763048-104786507 (+)
FVB/NJ	ENSMUSG00205021162	protein coding gene	Chr5:104762981-104769235 (+)
JF1/MsJ	ENSUMUG00000019478	lncRNA gene	Chr5:111740653-111764069 (+)
LP/J	ENSMUSG00230049790	lncRNA gene	Chr5:113022922-113046467 (+)
LP/J	ENSMUSG00230047654	protein coding gene	Chr5:113022855-113029127 (+)
NOD/ShiLtJ	ENSMUSG00190051113	lncRNA gene	Chr5:104799159-104822621 (+)
NOD/ShiLtJ	ENSMUSG00190046538	protein coding gene	Chr5:104799092-104805346 (+)
NZO/HlLtJ	ENSMUSG00225025969	lncRNA gene	Chr5:120644794-120668340 (+)
NZO/HlLtJ	ENSMUSG00225024410	protein coding gene	Chr5:120644727-120650999 (+)
PWK/PhJ	ENSLUMG00010040332	lncRNA gene	Chr5:103647132-103670428 (+)
SPRET/EiJ	ENSMSPG00010045976	lncRNA gene	Chr5:106913876-106937494 (+)
WSB/EiJ	ENSIUOG00005044943	lncRNA gene	Chr5:107503033-107527293 (+)

Homology

• Gene Tree
  C130026L21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving C130026L21Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  600
• Tissues
  3
• cDNA Data
  7
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  109
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000052848 (Evidence)
• NCBI Gene
  330164

Representative Sequences			Length	Strain/Species
genomic	330164	NCBI Gene Model | MGI Sequence Detail	5593	C57BL/6J
transcript	NR_015546	RefSeq | MGI Sequence Detail	1838	C57BL/6
polypeptide	Q8C897	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034