A830008E24Rik Gene Detail

Summary

• Symbol
  A830008E24Rik
• Name
  RIKEN cDNA A830008E24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041183
  NCBI Gene: 108167736
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:153902361-153993599 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2677 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041183	lncRNA gene	Chr1:153853975-153995575 (-)
129S1/SvImJ	ENSMUSG00200003107	lncRNA gene	Chr1:151355530-151435829 (-)
A/J	ENSMUSG00195014608	lncRNA gene	Chr1:150733554-150813909 (-)
AKR/J	ENSMUSG00220006240	lncRNA gene	Chr1:150542512-150622855 (-)
BALB/cJ	ENSMUSG00180034182	lncRNA gene	Chr1:150962696-151043002 (-)
C3H/HeJ	ENSMUSG00175003030	lncRNA gene	Chr1:150999976-151080317 (-)
C57BL/6NJ	ENSMUSG00215003826	lncRNA gene	Chr1:150898140-150978490 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004527	lincRNA gene	Chr1:144776922-144857082 (-)
CAST/EiJ	ENSTCUG00005006125	lncRNA gene	Chr1:149552545-149632579 (-)
CBA/J	ENSMUSG00210034477	lncRNA gene	Chr1:150903542-150983869 (-)
DBA/2J	ENSMUSG00185048331	lncRNA gene	Chr1:155198767-155278350 (-)
FVB/NJ	ENSMUSG00205034025	lncRNA gene	Chr1:150037935-150118254 (-)
JF1/MsJ	ENSUMUG00000036519	lncRNA gene	Chr1:154344568-154424929 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013308	lncRNA gene	Chr1:150751673-150831975 (-)
NZO/HlLtJ	ENSMUSG00225006539	lncRNA gene	Chr1:158416630-158496940 (-)
PWK/PhJ	ENSLUMG00010031987	lncRNA gene	Chr1:149712009-149791683 (-)
SPRET/EiJ	ENSMSPG00010005628	lncRNA gene	Chr1:153024349-153104409 (-)
WSB/EiJ	ENSIUOG00005024948	lncRNA gene	Chr1:150322153-150401670 (-)

Homology

• Gene Tree
  A830008E24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving A830008E24Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  75
• RefSeq
  6

• Ensembl
  ENSMUSG00000100627 (Evidence)
• NCBI Gene
  108167736

Representative Sequences			Length	Strain/Species
genomic	108167736	NCBI Gene Model | MGI Sequence Detail	91239	C57BL/6J
transcript	NR_168298	RefSeq | MGI Sequence Detail	1975	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:5578992

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for A830008E24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14300	Chr1:153993593-153993602 (-)	1 bp
Tssr14299	Chr1:153993376-153993388 (-)	217 bp
Tssr14298	Chr1:153991922-153991933 (-)	1,671 bp
Tssr14297	Chr1:153991890-153991917 (-)	1,695 bp