A530013C23Rik Gene Detail

Summary

• Symbol
  A530013C23Rik
• Name
  RIKEN cDNA A530013C23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041178
  NCBI Gene: 329562
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:167532679-167539333 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 87.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041178	lncRNA gene	Chr2:167532548-167584184 (+)
129S1/SvImJ	ENSMUSG00200040486	lncRNA gene	Chr2:164415768-164454707 (+)
A/J	ENSMUSG00195025447	lncRNA gene	Chr2:164761319-164800320 (+)
AKR/J	ENSMUSG00220036162	lncRNA gene	Chr2:164068613-164107618 (+)
BALB/cJ	ENSMUSG00180037200	lncRNA gene	Chr2:164214928-164253928 (+)
C3H/HeJ	ENSMUSG00175042453	lncRNA gene	Chr2:164986799-165025810 (+)
C57BL/6NJ	ENSMUSG00215035441	lncRNA gene	Chr2:164409693-164448697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005529	lincRNA gene	Chr2:159614523-159653270 (+)
CAST/EiJ	ENSTCUG00005009200	lncRNA gene	Chr2:163293993-163333260 (+)
CBA/J	ENSMUSG00210042476	lncRNA gene	Chr2:164895272-164934256 (+)
DBA/2J	ENSMUSG00185027561	lncRNA gene	Chr2:164608994-164647986 (+)
FVB/NJ	ENSMUSG00205024877	lncRNA gene	Chr2:163641699-163680683 (+)
JF1/MsJ	ENSUMUG00000049410	lncRNA gene	Chr2:164249593-164289267 (+)
LP/J	ENSMUSG00230013485	lncRNA gene	Chr2:166176576-166215513 (+)
NOD/ShiLtJ	ENSMUSG00190041452	lncRNA gene	Chr2:164300200-164339208 (+)
NZO/HlLtJ	ENSMUSG00225003247	lncRNA gene	Chr2:174181928-174220923 (+)
PWK/PhJ	ENSLUMG00010038618	lncRNA gene	Chr2:164151450-164191132 (+)
SPRET/EiJ	ENSMSPG00010028777	lncRNA gene	Chr2:166908677-166948050 (+)
WSB/EiJ	ENSIUOG00005026255	lncRNA gene	Chr2:164005271-164044301 (+)

Homology

• Gene Tree
  A530013C23Rik
  

Expression

• Assay Results
  651
• Tissues
  10
• cDNA Data
  5
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000006462 (Evidence)
• NCBI Gene
  329562

Representative Sequences			Length	Strain/Species
genomic	329562	NCBI Gene Model | MGI Sequence Detail	6655	C57BL/6J
transcript	NR_015500	RefSeq | MGI Sequence Detail	2171	C57BL/6
polypeptide	Q8BS38	UniProt | EBI | MGI Sequence Detail	143	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  Genomic 2

  cDNA 5

References

• Summaries
  All 12

  Developmental Gene Expression 1
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A530013C23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21832	Chr2:167532193-167532216 (+)	-474 bp
Tssr21833	Chr2:167532637-167532657 (+)	-32 bp
Tssr21834	Chr2:167532669-167532689 (+)	0 bp
Tssr21835	Chr2:167535374-167535381 (+)	2,699 bp