A330049N07Rik Gene Detail

Summary

• Symbol
  A330049N07Rik
• Name
  RIKEN cDNA A330049N07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041175
  NCBI Gene: 327768
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:72809135-72922537 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3275 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041175	lncRNA gene	Chr10:72793635-72922787 (-)
129S1/SvImJ	ENSMUSG00200017877	lncRNA gene	Chr10:69507987-69621396 (-)
A/J	ENSMUSG00195005979	lncRNA gene	Chr10:69821318-69934761 (-)
AKR/J	ENSMUSG00220030780	lncRNA gene	Chr10:69467643-69581077 (-)
BALB/cJ	ENSMUSG00180008102	lncRNA gene	Chr10:69835906-69949341 (-)
C3H/HeJ	ENSMUSG00175012949	lncRNA gene	Chr10:69686899-69800312 (-)
C57BL/6NJ	ENSMUSG00215004127	lncRNA gene	Chr10:69444865-69558284 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028117	lncRNA gene	Chr10:69341670-69459471 (-)
CBA/J	ENSMUSG00210009992	lncRNA gene	Chr10:69550708-69664113 (-)
DBA/2J	ENSMUSG00185020909	lncRNA gene	Chr10:69905846-70019270 (-)
FVB/NJ	ENSMUSG00205007817	lncRNA gene	Chr10:69640105-69753524 (-)
JF1/MsJ	ENSUMUG00000056499	lncRNA gene	Chr10:71079028-71198143 (-)
LP/J	ENSMUSG00230051399	lncRNA gene	Chr10:71675662-71789073 (-)
NOD/ShiLtJ	ENSMUSG00190008145	lncRNA gene	Chr10:69884618-70005384 (-)
NZO/HlLtJ	ENSMUSG00225048707	lncRNA gene	Chr10:75971996-76085421 (-)
PWK/PhJ	ENSLUMG00010008290	lncRNA gene	Chr10:69484512-69603751 (-)
SPRET/EiJ	ENSMSPG00010048805	lncRNA gene	Chr10:71204985-71324378 (-)
WSB/EiJ	ENSIUOG00005035228	lncRNA gene	Chr10:69459281-69578355 (-)

Homology

• Gene Tree
  A330049N07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving A330049N07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000111994 (Evidence)
• NCBI Gene
  327768

Representative Sequences			Length	Strain/Species
genomic	327768	NCBI Gene Model | MGI Sequence Detail	113403	C57BL/6J
transcript	NR_040646	RefSeq | MGI Sequence Detail	1989	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for A330049N07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98089	Chr10:72922537-72922563 (-)	-13 bp