9330151L19Rik Gene Detail

Summary

• Symbol
  9330151L19Rik
• Name
  RIKEN cDNA 9330151L19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041168
  NCBI Gene: 414085
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:69243985-69246642 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 28.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041168	lncRNA gene	Chr12:69243949-69248449 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019790	protein coding gene	Chr12:68861304-68863961 (+)
A/J	MGP_AJ_G0019748	protein coding gene	Chr12:66308552-66311209 (+)
AKR/J	MGP_AKRJ_G0019724	protein coding gene	Chr12:68294970-68297627 (+)
BALB/cJ	MGP_BALBcJ_G0019728	protein coding gene	Chr12:66773399-66776056 (+)
C3H/HeJ	MGP_C3HHeJ_G0019534	protein coding gene	Chr12:68760014-68762671 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020180	protein coding gene	Chr12:71053625-71056282 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017800	protein coding gene	Chr12:63853170-63855745 (+)
CAST/EiJ	MGP_CASTEiJ_G0019085	protein coding gene	Chr12:63510669-63513332 (+)
CBA/J	MGP_CBAJ_G0019503	protein coding gene	Chr12:73686634-73689291 (+)
DBA/2J	MGP_DBA2J_G0019619	protein coding gene	Chr12:66225524-66228181 (+)
FVB/NJ	MGP_FVBNJ_G0019606	protein coding gene	Chr12:65121894-65124551 (+)
LP/J	MGP_LPJ_G0019691	protein coding gene	Chr12:68821971-68824622 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019645	protein coding gene	Chr12:77034367-77037024 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020215	protein coding gene	Chr12:67761461-67764118 (+)
PWK/PhJ	MGP_PWKPhJ_G0018850	protein coding gene	Chr12:60488603-60491258 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018645	protein coding gene	Chr12:62155638-62158515 (+)
WSB/EiJ	MGP_WSBEiJ_G0019136	protein coding gene	Chr12:68378724-68381381 (+)

Homology

• Gene Tree
  9330151L19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  14

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  3

• Ensembl
  ENSMUSG00000097061 (Evidence)
• NCBI Gene
  414085

Representative Sequences			Length	Strain/Species
genomic	414085	NCBI Gene Model | MGI Sequence Detail	2658	C57BL/6J
transcript	NR_033222	RefSeq | MGI Sequence Detail	2546	C57BL/6
polypeptide	Q3U4L0	UniProt | EBI | MGI Sequence Detail	180	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 14

  cDNA 14

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 9330151L19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3854	Chr12:69243938-69243971 (+)	-30 bp
Tssr113623	Chr12:69243974-69244027 (+)	16 bp