5330413P13Rik Gene Detail

Summary

• Symbol
  5330413P13Rik
• Name
  RIKEN cDNA 5330413P13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3041161
  NCBI Gene: 414081
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:131661926-131689576 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 63.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  923 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3041161	lncRNA gene	Chr2:131590002-131689656 (-)
129S1/SvImJ	ENSMUSG00200049039	lncRNA gene	Chr2:128701046-128728715 (-)
A/J	ENSMUSG00195031662	lncRNA gene	Chr2:128738295-128765974 (-)
AKR/J	ENSMUSG00220046190	lncRNA gene	Chr2:128494727-128522396 (-)
BALB/cJ	ENSMUSG00180050118	lncRNA gene	Chr2:128556795-128584474 (-)
C3H/HeJ	ENSMUSG00175047312	lncRNA gene	Chr2:129084892-129112559 (-)
C57BL/6NJ	ENSMUSG00215036504	lncRNA gene	Chr2:128586278-128613960 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013605	unclassified non-coding RNA gene	Chr2:124606041-124633887 (-)
CAST/EiJ	ENSTCUG00005041028	lncRNA gene	Chr2:127880720-127908334 (-)
CBA/J	ENSMUSG00210036053	lncRNA gene	Chr2:128941552-128969220 (-)
DBA/2J	ENSMUSG00185036863	lncRNA gene	Chr2:128604285-128631977 (-)
FVB/NJ	ENSMUSG00205042847	lncRNA gene	Chr2:127762570-127790256 (-)
JF1/MsJ	ENSUMUG00000030806	lncRNA gene	Chr2:128427398-128454948 (-)
LP/J	ENSMUSG00230040144	lncRNA gene	Chr2:130336160-130363828 (-)
NOD/ShiLtJ	ENSMUSG00190015971	lncRNA gene	Chr2:128693026-128720740 (-)
NZO/HlLtJ	ENSMUSG00225027924	lncRNA gene	Chr2:138244992-138272663 (-)
PWK/PhJ	ENSLUMG00010045362	lncRNA gene	Chr2:128409533-128437276 (-)
SPRET/EiJ	ENSMSPG00010035889	lncRNA gene	Chr2:130779040-130806877 (-)
WSB/EiJ	ENSIUOG00005044001	lncRNA gene	Chr2:128526081-128560973 (-)

Homology

• Gene Tree
  5330413P13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving 5330413P13Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000086822 (Evidence)
• NCBI Gene
  414081

Representative Sequences			Length	Strain/Species
genomic	414081	NCBI Gene Model | MGI Sequence Detail	27651	C57BL/6J
transcript	NR_029381	RefSeq | MGI Sequence Detail	3631	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 5330413P13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26404	Chr2:131689527-131689598 (-)	13 bp