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Oxct1as Gene Detail
Summary
  • Symbol
    Oxct1as
  • Name
    3-oxoacid CoA transferase 1 antisense RNA
  • Synonyms
    BC037032
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3040924
    NCBI Gene: 414066
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:4049596-4056887 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 1.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    69 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3040924
 lncRNA gene Chr15:4049593-4056888 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015289
 unclassified non-coding RNA gene Chr15:887560-894849 (-)
A/J MGP_AJ_G0015263
 unclassified non-coding RNA gene Chr15:914815-922106 (-)
AKR/J MGP_AKRJ_G0015226
 unclassified non-coding RNA gene Chr15:899690-906978 (-)
BALB/cJ MGP_BALBcJ_G0015227
 unclassified non-coding RNA gene Chr15:874763-882054 (-)
C3H/HeJ MGP_C3HHeJ_G0015051
 unclassified non-coding RNA gene Chr15:910548-917839 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015682
 unclassified non-coding RNA gene Chr15:973758-981049 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013423
 unclassified non-coding RNA gene Chr15:764130-771177 (-)
CAST/EiJ MGP_CASTEiJ_G0014602
 unclassified non-coding RNA gene Chr15:906032-914276 (-)
CBA/J MGP_CBAJ_G0015031
 unclassified non-coding RNA gene Chr15:955502-962793 (-)
DBA/2J MGP_DBA2J_G0015125
 unclassified non-coding RNA gene Chr15:888427-895715 (-)
FVB/NJ MGP_FVBNJ_G0015132
 unclassified non-coding RNA gene Chr15:837851-845135 (-)
LP/J MGP_LPJ_G0015205
 unclassified non-coding RNA gene Chr15:868463-875752 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015158
 unclassified non-coding RNA gene Chr15:1010048-1017337 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015721
 unclassified non-coding RNA gene Chr15:880706-887995 (-)
PWK/PhJ MGP_PWKPhJ_G0014394
 unclassified non-coding RNA gene Chr15:896294-903591 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014181
 unclassified non-coding RNA gene Chr15:953152-960484 (-)
WSB/EiJ MGP_WSBEiJ_G0014709
 unclassified non-coding RNA gene Chr15:868352-875643 (-)



Homology
more
  • Human Ortholog
    OXCT1-AS1, OXCT1 antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OXCT1-AS1, OXCT1 antisense RNA 1
  • Synonyms
    SARRAH
  • Links
    NCBI Gene ID: 100874002

  • Chr Location
    chr5:41869927-41872241 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087221 Ensembl Gene Model | MGI Sequence Detail 7292 C57BL/6J ±  kb
transcript ENSMUST00000194637 Ensembl | MGI Sequence Detail 4379 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
References
more
  • Summaries
    All 11
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory