A530083I20Rik Gene Detail

Summary

• Symbol
  A530083I20Rik
• Name
  RIKEN cDNA A530083I20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3040711
  NCBI Gene: 331045
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:122714145-122733351 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 73.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  544 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3040711	lncRNA gene	Chr9:122714145-122733351 (-)
129S1/SvImJ	ENSMUSG00200031826	lncRNA gene	Chr9:119841776-119860227 (-)
A/J	ENSMUSG00195028934	lncRNA gene	Chr9:118981355-118999792 (-)
AKR/J	ENSMUSG00220019912	lncRNA gene	Chr9:119453329-119471780 (-)
BALB/cJ	ENSMUSG00180029804	lncRNA gene	Chr9:119521196-119539633 (-)
C3H/HeJ	ENSMUSG00175019724	lncRNA gene	Chr9:119757540-119775977 (-)
C57BL/6NJ	ENSMUSG00215036055	lncRNA gene	Chr9:119676897-119695350 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006848	lincRNA gene	Chr9:118212962-118231468 (-)
CAST/EiJ	ENSTCUG00005017135	lncRNA gene	Chr9:119344330-119363591 (-)
CBA/J	ENSMUSG00210043709	lncRNA gene	Chr9:119481198-119500095 (-)
DBA/2J	ENSMUSG00185017373	lncRNA gene	Chr9:119816851-119835746 (-)
FVB/NJ	ENSMUSG00205029821	lncRNA gene	Chr9:119647926-119666363 (-)
JF1/MsJ	ENSUMUG00000047371	lncRNA gene	Chr9:119614615-119633352 (-)
LP/J	ENSMUSG00230037731	lncRNA gene	Chr9:119981925-120000376 (-)
NOD/ShiLtJ	ENSMUSG00190015131	lncRNA gene	Chr9:119424801-119443252 (-)
NZO/HlLtJ	ENSMUSG00225023986	lncRNA gene	Chr9:120242245-120260696 (-)
PWK/PhJ	ENSLUMG00010039953	lncRNA gene	Chr9:119508759-119527236 (-)
SPRET/EiJ	ENSMSPG00010025754	lncRNA gene	Chr9:121220378-121240547 (-)
WSB/EiJ	ENSIUOG00005022959	lncRNA gene	Chr9:118851867-118870762 (-)

Homology

• Gene Tree
  A530083I20Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000097322 (Evidence)
• NCBI Gene
  331045

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097322	Ensembl Gene Model | MGI Sequence Detail	19207	C57BL/6J
transcript	ENSMUST00000216924	Ensembl | MGI Sequence Detail	4549	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 8
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for A530083I20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92111	Chr9:122732167-122732227 (-)	1,154 bp