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BC050972 Gene Detail
Summary
  • Symbol
    BC050972
  • Name
    cDNA sequence BC050972
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3039596
    NCBI Gene: 407808
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:66706222-66711664 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 36.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039596
 lncRNA gene Chr9:66705960-66711664 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004639
 antisense lncRNA gene Chr9:66665264-66670963 (-)
A/J MGP_AJ_G0004620
 antisense lncRNA gene Chr9:64357246-64362927 (-)
AKR/J MGP_AKRJ_G0004603
 antisense lncRNA gene Chr9:65891682-65897364 (-)
BALB/cJ MGP_BALBcJ_G0004604
 antisense lncRNA gene Chr9:64091319-64097000 (-)
C3H/HeJ MGP_C3HHeJ_G0004553
 antisense lncRNA gene Chr9:66427270-66432951 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004754
 antisense lncRNA gene Chr9:68492473-68499516 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004205
 antisense lncRNA gene Chr9:63998834-64004617 (-)
CAST/EiJ MGP_CASTEiJ_G0004511
 antisense lncRNA gene Chr9:66654434-66660173 (-)
CBA/J MGP_CBAJ_G0004547
 antisense lncRNA gene Chr9:70834774-70840455 (-)
DBA/2J MGP_DBA2J_G0004562
 antisense lncRNA gene Chr9:64129655-64135336 (-)
FVB/NJ MGP_FVBNJ_G0004580
 antisense lncRNA gene Chr9:63473044-63478750 (-)
LP/J MGP_LPJ_G0004643
 antisense lncRNA gene Chr9:66944122-66949821 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004568
 antisense lncRNA gene Chr9:72063804-72069446 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004753
 antisense lncRNA gene Chr9:66008926-66014607 (-)
PWK/PhJ MGP_PWKPhJ_G0004464
 antisense lncRNA gene Chr9:64348879-64354590 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004404
 antisense lncRNA gene Chr9:66325493-66331505 (-)
WSB/EiJ MGP_WSBEiJ_G0004552
 antisense lncRNA gene Chr9:65907530-65913221 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 407808 NCBI Gene Model | MGI Sequence Detail 5443 C57BL/6J ±  kb
transcript BC050972 GenBank | ENA | DDBJ | MGI Sequence Detail 559 Not Specified  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 9
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory