BC050972 Gene Detail

Summary

• Symbol
  BC050972
• Name
  cDNA sequence BC050972

• Feature Type
  lncRNA gene
• IDs
  MGI:3039596
  NCBI Gene: 407808
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:66706222-66711664 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 36.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3039596	lncRNA gene	Chr9:66704919-66714680 (-)
129S1/SvImJ	ENSMUSG00200044407	lncRNA gene	Chr9:63804393-63810092 (-)
A/J	ENSMUSG00195027412	lncRNA gene	Chr9:63525179-63530860 (-)
AKR/J	ENSMUSG00220042889	lncRNA gene	Chr9:63663216-63668897 (-)
BALB/cJ	ENSMUSG00180018076	lncRNA gene	Chr9:63644716-63650397 (-)
C3H/HeJ	ENSMUSG00175013378	lncRNA gene	Chr9:63658416-63664097 (-)
C57BL/6NJ	ENSMUSG00215032163	lncRNA gene	Chr9:63648309-63653990 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004205	antisense lncRNA gene	Chr9:63998834-64004617 (-)
CAST/EiJ	ENSTCUG00005032719	lncRNA gene	Chr9:63556837-63562576 (-)
CBA/J	ENSMUSG00210014419	lncRNA gene	Chr9:63745490-63751171 (-)
DBA/2J	ENSMUSG00185034941	lncRNA gene	Chr9:63770387-63776068 (-)
FVB/NJ	ENSMUSG00205033558	lncRNA gene	Chr9:64089018-64094724 (-)
JF1/MsJ	ENSUMUG00000042862	lncRNA gene	Chr9:63845585-63851295 (-)
LP/J	ENSMUSG00230027370	lncRNA gene	Chr9:64003291-64008990 (-)
NOD/ShiLtJ	ENSMUSG00190022376	lncRNA gene	Chr9:63870516-63876197 (-)
NZO/HlLtJ	ENSMUSG00225046415	lncRNA gene	Chr9:64070014-64075695 (-)
PWK/PhJ	ENSLUMG00010026548	lncRNA gene	Chr9:63798640-63804351 (-)
SPRET/EiJ	ENSMSPG00010023634	lncRNA gene	Chr9:64864718-64869603 (-)
WSB/EiJ	ENSIUOG00005028154	lncRNA gene	Chr9:63259075-63264766 (-)

Homology

• Gene Tree
  BC050972
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving BC050972
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  2

• Ensembl
  ENSMUSG00000092131 (Evidence)
• NCBI Gene
  407808

Representative Sequences			Length	Strain/Species
genomic	407808	NCBI Gene Model | MGI Sequence Detail	5443	C57BL/6J
transcript	BC050972	GenBank | ENA | DDBJ | MGI Sequence Detail	559	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for BC050972:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90270	Chr9:66711624-66711639 (-)	32 bp
Tssr90269	Chr9:66711608-66711623 (-)	48 bp