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BC039966 Gene Detail
Summary
  • Symbol
    BC039966
  • Name
    cDNA sequence BC039966
Location &
Maps
more
  • Sequence Map
    Chr4:154032912-154034933 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 83.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    150 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039570
 lncRNA gene Chr4:154021518-154039122 (-)
129S1/SvImJ ENSMUSG00200019667
 lncRNA gene Chr4:145093403-145096313 (-)
A/J ENSMUSG00195020919
 lncRNA gene Chr4:146750139-146753058 (-)
AKR/J ENSMUSG00220027790
 lncRNA gene Chr4:146336716-146339633 (-)
BALB/cJ ENSMUSG00180002697
 lncRNA gene Chr4:144410599-144413511 (-)
C3H/HeJ ENSMUSG00175019213
 lncRNA gene Chr4:147717061-147719980 (-)
C57BL/6NJ ENSMUSG00215029595
 lncRNA gene Chr4:146547690-146550600 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003610
 antisense lncRNA gene Chr4:143852615-143855477 (-)
CAST/EiJ ENSTCUG00005036309
 lncRNA gene Chr4:150413730-150416690 (-)
CBA/J ENSMUSG00210006054
 lncRNA gene Chr4:146375292-146378209 (-)
DBA/2J ENSMUSG00185017387
 lncRNA gene Chr4:149932516-149935435 (-)
FVB/NJ ENSMUSG00205022907
 lncRNA gene Chr4:144830303-144832043 (-)
JF1/MsJ ENSUMUG00000000464
 lncRNA gene Chr4:152942756-152945675 (-)
LP/J ENSMUSG00230025965
 lncRNA gene Chr4:156653725-156656635 (-)
NOD/ShiLtJ ENSMUSG00190004211
 lncRNA gene Chr4:146032855-146035776 (-)
NZO/HlLtJ ENSMUSG00225024590
 lncRNA gene Chr4:160648239-160651146 (-)
PWK/PhJ ENSLUMG00010028237
 lncRNA gene Chr4:145207901-145210825 (-)
SPRET/EiJ ENSMSPG00010024618
 lncRNA gene Chr4:147159231-147162216 (-)
WSB/EiJ ENSIUOG00005006680
 lncRNA gene Chr4:144239726-144242635 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    39
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 407793 NCBI Gene Model | MGI Sequence Detail 2022 C57BL/6J ±  kb
transcript NR_040670 RefSeq | MGI Sequence Detail 522 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5
References
more
  • Summaries
    All 15
    Phenotypes 3
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory