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BC049739 Gene Detail
Summary
  • Symbol
    BC049739
  • Name
    cDNA sequence BC049739
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3039568
    NCBI Gene: 407791
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:32728564-32729223 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039568
 lncRNA gene Chr6:32728564-32729223 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006933
 lincRNA gene Chr6:30756903-30757561 (-)
A/J MGP_AJ_G0006927
 lincRNA gene Chr6:29429039-29429697 (-)
AKR/J MGP_AKRJ_G0006897
 lincRNA gene Chr6:30421262-30421920 (-)
BALB/cJ MGP_BALBcJ_G0006903
 lincRNA gene Chr6:29560204-29560862 (-)
C3H/HeJ MGP_C3HHeJ_G0006848
 lincRNA gene Chr6:30395605-30396263 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007068
 lincRNA gene Chr6:31549777-31550436 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006315
 lincRNA gene Chr6:27566047-27566731 (-)
CAST/EiJ MGP_CASTEiJ_G0006765
 lincRNA gene Chr6:30193941-30194600 (-)
CBA/J MGP_CBAJ_G0006830
 lincRNA gene Chr6:32752871-32753529 (-)
DBA/2J MGP_DBA2J_G0006850
 lincRNA gene Chr6:29332781-29333439 (-)
FVB/NJ MGP_FVBNJ_G0006873
 lincRNA gene Chr6:29121605-29122264 (-)
LP/J MGP_LPJ_G0006933
 lincRNA gene Chr6:30891948-30892606 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006854
 lincRNA gene Chr6:35118971-35119629 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007070
 lincRNA gene Chr6:30304764-30305422 (-)
PWK/PhJ MGP_PWKPhJ_G0006707
 lincRNA gene Chr6:28914062-28914721 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006615
 lincRNA gene Chr6:29988373-29989030 (-)
WSB/EiJ MGP_WSBEiJ_G0006820
 lincRNA gene Chr6:30234536-30235195 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106873 Ensembl Gene Model | MGI Sequence Detail 660 C57BL/6J ±  kb
transcript ENSMUST00000202626 Ensembl | MGI Sequence Detail 660 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 7
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory