Gm1947 Pseudogene Detail

Summary

• Symbol
  Gm1947
• Name
  predicted pseudogene 1947
• Synonyms
  LOC384929

• Feature Type
  pseudogene
• IDs
  MGI:3037805
  NCBI Gene: 384929
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:156212413-156213322 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.47 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037805	pseudogene	ChrX:156212413-156213322 (+)
129S1/SvImJ	ENSMUSG00200026884	pseudogene	ChrX:132957120-132958029 (+)
A/J	ENSMUSG00195038719	pseudogene	ChrX:138052107-138053017 (+)
AKR/J	ENSMUSG00220034964	pseudogene	ChrX:129896915-129897824 (+)
BALB/cJ	ENSMUSG00180042034	pseudogene	ChrX:133418394-133419303 (+)
C3H/HeJ	ENSMUSG00175026760	pseudogene	ChrX:137989580-137990489 (+)
C57BL/6NJ	ENSMUSG00215023959	pseudogene	ChrX:133787393-133788302 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013014	pseudogene	ChrX:145994316-145995219 (+)
CAST/EiJ	ENSTCUG00005035024	pseudogene	ChrX:135633862-135634760 (+)
CBA/J	ENSMUSG00210040446	pseudogene	ChrX:135297979-135298888 (+)
DBA/2J	ENSMUSG00185045838	pseudogene	ChrX:150258795-150259704 (+)
FVB/NJ	ENSMUSG00205033527	pseudogene	ChrX:133908186-133909096 (+)
JF1/MsJ	ENSUMUG00000043732	pseudogene	ChrX:170668258-170669159 (+)
LP/J	ENSMUSG00230014581	pseudogene	ChrX:157042040-157042949 (+)
NOD/ShiLtJ	ENSMUSG00190036608	pseudogene	ChrX:134431059-134431969 (+)
NZO/HlLtJ	ENSMUSG00225042854	pseudogene	ChrX:160448147-160449056 (+)
PWK/PhJ	ENSLUMG00010034768	pseudogene	ChrX:131775571-131776473 (+)
SPRET/EiJ	ENSMSPG00010019811	pseudogene	ChrX:136880786-136881686 (+)
WSB/EiJ	ENSIUOG00005026506	pseudogene	ChrX:134770891-134771800 (+)

Homology

• Gene Tree
  Gm1947
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  25 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm1947
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083841 (Evidence)
• NCBI Gene
  384929

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083841	Ensembl Gene Model | MGI Sequence Detail	910	C57BL/6J
transcript	ENSMUST00000122451	Ensembl | MGI Sequence Detail	910	Not Applicable

References

• Summaries
  All 30

  Diseases 2

  Phenotypes 25
• Earliest
  J:28887 Carter TC, et al., The genetic sensitivity to X-rays of mouse foetal gonads. Genet Res. 1960;1(3):351-5
• Latest
  J:145570 Wang X, et al., Spermine synthase deficiency leads to deafness and a profound sensitivity to alpha-difluoromethylornithine. J Biol Chem. 2009 Jan 9;284(2):930-7