A530010L16Rik Gene Detail

Summary

• Symbol
  A530010L16Rik
• Name
  RIKEN cDNA A530010L16 gene
• Synonyms
  Gm45801, LOC382036

• Feature Type
  lncRNA gene
• IDs
  MGI:3037766
  NCBI Gene: 382036
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:123487749-123489500 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 71.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3037766	lncRNA gene	Chr8:123486784-123489760 (-)
129S1/SvImJ	ENSMUSG00200043842	lncRNA gene	Chr8:117817233-117820217 (-)
A/J	ENSMUSG00195027277	lncRNA gene	Chr8:118107521-118110505 (-)
AKR/J	ENSMUSG00220043574	lncRNA gene	Chr8:118298659-118301643 (-)
BALB/cJ	ENSMUSG00180028172	lncRNA gene	Chr8:118153549-118156533 (-)
C3H/HeJ	ENSMUSG00175034046	lncRNA gene	Chr8:118210399-118213383 (-)
C57BL/6NJ	ENSMUSG00215035603	lncRNA gene	Chr8:117792794-117795770 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035302	lncRNA gene	Chr8:117539296-117542279 (-)
CBA/J	ENSMUSG00210039558	lncRNA gene	Chr8:118145255-118148231 (-)
DBA/2J	ENSMUSG00185037111	lncRNA gene	Chr8:124250186-124253162 (-)
FVB/NJ	ENSMUSG00205036427	lncRNA gene	Chr8:117111440-117114416 (-)
JF1/MsJ	ENSUMUG00000039051	lncRNA gene	Chr8:126548452-126551412 (-)
LP/J	ENSMUSG00230030913	lncRNA gene	Chr8:127868673-127871657 (-)
NOD/ShiLtJ	ENSMUSG00190022213	lncRNA gene	Chr8:118245746-118248722 (-)
NZO/HlLtJ	ENSMUSG00225043231	lncRNA gene	Chr8:131250672-131253648 (-)
PWK/PhJ	ENSLUMG00010041649	lncRNA gene	Chr8:117952985-117955945 (-)
SPRET/EiJ	ENSMSPG00010040706	lncRNA gene	Chr8:120147206-120150178 (-)
WSB/EiJ	ENSIUOG00005030393	lncRNA gene	Chr8:118937876-118940852 (-)

Homology

• Gene Tree
  A530010L16Rik
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000110682 (Evidence)
• NCBI Gene
  382036

Representative Sequences			Length	Strain/Species
genomic	382036	NCBI Gene Model | MGI Sequence Detail	1752	C57BL/6J
transcript	NR_151739	RefSeq | MGI Sequence Detail	746	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:2670990, MGI:5804916

References

• Summaries
  All 10
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;